@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : RFA3_HUMAN: (2020-02-03 )
MVDMMDLPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQFYPLGIVQHD
Atome Classification :
(20 SA)
.........10........20........30........40-......--------..--.50......---..-60-------.--..--......70...-..---.------..80.----......--.90........100.....--..110.......120
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MV
D
M
M
DL
P
R
S
RI
N
A
G
M
L
A
Q
F
IDKP
V
C
F
V
G
R
L
E
KIHPTG
K
M
--
F
I
L
SDG--------EG--KNG
T
I
E
L
M
E
---
P
L
-
D
--------
E
--
E
I
--
S
G
I
V
E
V
V
G
R
V
T-A
K
---
A
------
T
I
L
C
T----S
Y
V
Q
FK--EDSHPFDL
G
L
Y
N
E
A
V
K
I
I
H
--DFPQFYPLGIVQHD
3
PsiBlast_PDB
97.22
100%
-127
- C5 -
-
2Z6K
-
RFA3_HUMAN
C:
[2-118]
-
V
D
M
M
D
L
P
R
S
R
I
N
A
G
M
L
A
Q
F
I
D
K
P
V
C
F
V
G
R
L
E
K
I
H
P
T
G
K
M
--
F
I
L
S
D
G
--------
E
G
--
K
N
G
T
I
E
L
M
E
---
P
L
-
D
--------
E
--
E
I
--
S
G
I
V
E
V
V
G
R
V
T
-
A
K
---
A
------
T
I
L
C
T
----
S
Y
V
Q
F
K
--
E
D
S
H
P
F
D
L
G
L
Y
N
E
A
V
K
I
I
H
--
D
F
P
Q
F
Y
P
L
G
I
V
---
19
HHSearch
96.66
100%
-134
- C5 -
-
3KDF
4
RFA3_HUMAN
C:
[2-118]
-
V
D
M
M
D
L
P
R
S
R
I
N
A
G
M
L
A
Q
F
I
D
K
P
V
C
F
V
G
R
L
E
K
I
H
P
T
G
K
M
--
F
I
L
S
D
G
--------
E
G
--
K
N
G
T
I
E
L
M
E
---
P
L
-
D
--------
E
--
E
I
--
S
G
I
V
E
V
V
G
R
V
T
-
A
K
---
A
------
T
I
L
C
T
----
S
Y
V
Q
F
K
--
E
D
S
H
P
F
D
L
G
L
Y
N
E
A
V
K
I
I
H
--
D
F
P
Q
F
Y
P
L
G
I
V
---
39
Fugue
96.60
100%
-119
- C5 -
-
1QUQ
-
RFA3_HUMAN
B:
[3-116]
--
D
M
M
D
L
P
R
S
R
I
N
A
G
M
L
A
Q
F
I
D
K
P
V
C
F
V
G
R
L
E
K
I
H
P
T
G
K
M
--
F
I
L
S
D
G
--------
E
G
--
K
N
G
T
I
E
L
M
E
---
P
L
-
D
--------
E
--
E
I
--
S
G
I
V
E
V
V
G
R
V
T
-
A
K
---
A
------
T
I
L
C
T
----
S
Y
V
Q
F
K
--
E
D
S
H
P
F
D
L
G
L
Y
N
E
A
V
K
I
I
H
--
D
F
P
Q
F
Y
P
L
G
-----
4
PsiBlast_PDB
96.60
100%
-119
- C5 -
-
1QUQ
-
RFA3_HUMAN
B:
[3-116]
--
D
M
M
D
L
P
R
S
R
I
N
A
G
M
L
A
Q
F
I
D
K
P
V
C
F
V
G
R
L
E
K
I
H
P
T
G
K
M
--
F
I
L
S
D
G
--------
E
G
--
K
N
G
T
I
E
L
M
E
---
P
L
-
D
--------
E
--
E
I
--
S
G
I
V
E
V
V
G
R
V
T
-
A
K
---
A
------
T
I
L
C
T
----
S
Y
V
Q
F
K
--
E
D
S
H
P
F
D
L
G
L
Y
N
E
A
V
K
I
I
H
--
D
F
P
Q
F
Y
P
L
G
-----
1
PsiBlast_PDB
96.26
100%
-125
- C5 -
-
2PI2
1
RFA3_HUMAN
E:
[23-139]
-
V
D
M
M
D
L
P
R
S
R
I
N
A
G
M
L
A
Q
F
I
D
K
P
V
C
F
V
G
R
L
E
K
I
H
P
T
G
K
M
--
F
I
L
S
D
G
--------
E
G
--
K
N
G
T
I
E
L
M
E
---
P
L
-
D
--------
E
--
E
I
--
S
G
I
V
E
V
V
G
R
V
T
-
A
K
---
A
------
T
I
L
C
T
----
S
Y
V
Q
F
K
--
E
D
S
H
P
F
D
L
G
L
Y
N
E
A
V
K
I
I
H
--
D
F
P
Q
F
Y
P
L
G
I
V
---
2
PsiBlast_PDB
95.73
100%
-132
- C5 -
-
2PQA
-
RFA3_HUMAN
B:
[3-116]
--
D
M
M
D
L
P
R
S
R
I
N
A
G
M
L
A
Q
F
I
D
K
P
V
C
F
V
G
R
L
E
K
I
H
P
T
G
K
M
--
F
I
L
S
D
G
--------
E
G
--
K
N
G
T
I
E
L
M
E
---
P
L
-
D
--------
E
--
E
I
--
S
G
I
V
E
V
V
G
R
V
T
-
A
K
---
A
------
T
I
L
C
T
----
S
Y
V
Q
F
K
--
E
D
S
H
P
F
D
L
G
L
Y
N
E
A
V
K
I
I
H
--
D
F
P
Q
F
Y
P
L
G
-----
6
PsiBlast_PDB
93.97
95%
-126
- C5 -
-
3KDF
4
RFA3_HUMAN
A:
[2-116]
-
V
D
M
M
D
L
P
R
S
R
I
N
A
G
M
L
A
Q
F
I
D
K
P
V
C
F
V
G
R
L
E
K
I
H
P
T
G
K
M
--
F
I
L
S
D
G
--------
E
G
--
K
N
G
T
I
E
L
M
E
---
P
L
-
D
--------
E
--
E
I
--
S
G
I
V
E
V
V
G
R
V
T
-
A
K
---
A
------
T
I
L
C
T
----
S
Y
V
Q
F
K
--
E
D
S
H
P
F
D
L
G
L
Y
N
E
A
V
K
I
I
H
--
D
F
P
Q
F
Y
P
L
G
-----
5
PsiBlast_PDB
93.38
100%
-124
- C5 -
-
1L1O
-
RFA3_HUMAN
A:
[3-117]
--
D
M
M
D
L
P
R
S
R
I
N
A
G
M
L
A
Q
F
I
D
K
P
V
C
F
V
G
R
L
E
K
I
H
P
T
G
K
M
--
F
I
L
S
D
G
--------
E
G
--
K
N
G
T
I
E
L
M
E
---
P
L
-
D
--------
E
--
E
I
--
S
G
I
V
E
V
V
G
R
V
T
-
A
K
---
A
------
T
I
L
C
T
----
S
Y
V
Q
F
K
--
E
D
S
H
P
F
D
L
G
L
Y
N
E
A
V
K
I
I
H
--
D
F
P
Q
F
Y
P
L
G
I
----
8
PsiBlast_PDB
61.53
28%
-89
- C5 -
-
4GNX
-
?
A:
[1-110]
----
M
E
K
P
T
P
L
I
N
S
S
M
L
G
Q
Y
V
G
Q
T
V
R
I
V
G
K
V
H
K
V
--
T
G
N
T
--
L
L
M
Q
T
S
--------
D
L
--
G
N
V
E
I
A
M
T
P
---
D
S
-
D
--------
V
--
S
S
--
S
T
F
V
E
V
T
G
K
V
S
D
A
G
---
S
------
S
F
Q
A
N
----
Q
I
R
E
F
T
TV----
D
V
D
L
T
L
V
E
N
V
V
Q
I
S
A
--
A
F
P
N
L
F
--------
7
PsiBlast_PDB
60.57
28%
-87
- C5 -
-
4GOP
-
?
A:
[1-110]
----
M
E
K
P
T
P
L
I
N
S
S
M
L
G
Q
Y
V
G
Q
T
V
R
I
V
G
K
V
H
K
V
--
T
G
N
T
--
L
L
M
Q
T
S
--------
D
L
--
G
N
V
E
I
A
M
T
P
---
D
S
-
D
--------
V
--
S
S
--
S
T
F
V
E
V
T
G
K
V
S
D
A
G
---
S
------
S
F
Q
A
N
----
Q
I
R
E
F
T
TV----
D
V
D
L
T
L
V
E
N
V
V
Q
I
S
A
--
A
F
P
N
L
F
--------
20
HHSearch
59.39
28%
-103
- C5 -
-
4GNX
-
?
X:
[1-112]
----
M
E
K
P
T
P
L
I
N
S
S
M
L
G
Q
Y
V
G
Q
T
V
R
I
V
G
K
V
H
K
V
T
--
G
N
T
--
L
L
M
Q
T
S
--------
D
L
--
G
N
V
E
I
A
M
T
P
---
D
S
-
D
--------
V
--
S
S
--
S
T
F
V
E
V
T
G
K
V
S
-
D
A
---
G
SSFQAN
Q
I
R
E
F
----
T
T
V
---------
D
V
D
L
T
L
V
E
N
V
V
Q
I
S
A
--
A
F
P
N
L
F
S
D
------
21
HHSearch
58.75
28%
-104
- C5 -
-
4GOP
-
?
X:
[1-112]
----
M
E
K
P
T
P
L
I
N
S
S
M
L
G
Q
Y
V
G
Q
T
V
R
I
V
G
K
V
H
K
V
T
--
G
N
T
--
L
L
M
Q
T
S
--------
D
L
--
G
N
V
E
I
A
M
T
P
---
D
S
-
D
--------
V
--
S
S
--
S
T
F
V
E
V
T
G
K
V
S
-
D
A
---
G
SSFQAN
Q
I
R
E
F
----
T
T
V
---------
D
V
D
L
T
L
V
E
N
V
V
Q
I
S
A
--
A
F
P
N
L
F
S
D
------
22
HHSearch
46.92
21%
-2
- C5 -
-
6D6V
-
?
F:
[6-118]
----
E
Q
V
M
Y
P
R
I
L
F
E
Q
M
A
Q
F
R
G
K
K
V
T
V
V
G
N
V
C
N
E
D
Q
N
-
D
S
--
L
V
I
E
F
G
P-------
T
G
LN
Q
H
V
V
I
D
N
Y
R
RV-
D
L
-
N
-----------
N
T
--
T
K
F
V
E
I
R
G
V
V
L
-
N
Q
---
N
------
I
V
S
C
E
----
E
L
T
E
F
E
QK
D
---
P
F
D
F
D
T
Y
S
K
L
I
H
L
S
Q
SD
K
L
S
S
L
F
--------
35
HHSearch
44.34
25%
-70
- C5 -
-
5ZG8
-
?
A:
[1-93]
---------
M
R
V
F
I
D
E
I
A
R
H
V
D
Q
E
V
E
L
R
G
W
L
Y
Q
R
R
S
K
G
K
I
HF
L
I
L
R
D
G
---------
T
--
G
F
L
Q
A
T
V
V
Q
---
G
E
-
V
PEAVFREA
D
HL
P
Q
--
E
T
A
L
R
V
W
G
R
V
R
-
E
---------------------------------------------------------------
38
HHSearch
43.90
18%
-128
- C5 -
-
3NBH
-
RMI2_HUMAN
B:
[52-126]
------------------
P
L
D
L
A
A
V
W
M
Q
G
R
V
V
M
A
D
--
R
G
E
--
A
R
L
R
D
P
--------
S
G
---
D
F
S
V
R
G
L
E
---
R
V
-
P
RGR-----
P
CL
V
P
--
G
K
Y
V
M
V
M
G
V
V
Q
-
A
C
SPE
P
------
C
L
Q
A
V
----
K
M
T
D
L
S
-------------------------------------
33
HHSearch
43.02
18%
-139
- C5 -
-
3MXN
-
RMI2_HUMAN
B:
[55-128]
------------------
P
L
D
L
A
A
V
W
M
Q
G
R
V
V
M
A
D
--
R
G
E
--
A
R
L
R
D
P
--------
S
G
---
D
F
S
V
R
G
L
E
---
R
V
-
P
RGR-----
P
--
C
L
VP
G
K
Y
V
M
V
M
G
V
V
Q
-
A
C
---
S
PEP---
C
L
Q
A
V
----
K
M
T
D
L
--------------------------------------
25
HHSearch
42.92
16%
-43
- C5 -
-
6I52
-
RFA3_YEAST
A:
[1-122]
----
M
A
S
E
T
P
R
V
D
P
T
E
I
S
N
V
N
A
P
V
F
R
I
I
A
Q
I
K
S
Q
P
T
-
E
S
Q
--
L
I
L
Q
S
P
TISSKNGS
E
V
--
E
M
I
T
L
N
N
I
R
VSM
N
K
-
T
--------
F
--
E
I
--
D
S
W
Y
E
F
V
C
R
N
N
-
D
D
---
G
------
E
L
G
F
L
ILDA
V
L
C
K
F
K
--
E
N
-
E
D
L
S
L
N
G
V
V
A
L
Q
R
L
C
K
--
K
Y
P
E
I
Y
--------
28
HHSearch
39.37
17%
-84
- C5 -
-
3KFU
-
SYDND_THET8
C:
[2-105]
----------
R
V
L
V
R
D
L
K
A
H
V
G
Q
E
V
E
L
L
G
F
L
H
W
R
R
D
L
G
R
I
QF
L
L
L
R
D
R
--------
S
---
G
V
V
Q
V
V
T
G
G
---
L
K
-
L
--------
P
--
L
P
--
E
S
A
L
R
V
R
G
L
V
V
-
E
---------------------------------------------------------------
24
HHSearch
39.23
16%
-67
- C5 -
-
3KF6
-
B:
[507-601]
----------
I
F
I
N
Q
I
N
D
C
K
D
G
Q
K
L
R
F
L
G
C
V
Q
S
Y
K
----
N
--
G
I
L
R
L
I
--------
D
G
S-
S
S
V
T
C
D
V
T
V
---
V
L
P
D
--------
V
--
S
I
QK
H
E
W
L
N
I
V
G
R
K
R
-
Q
D
---
G
------
I
V
D
V
L
----
L
I
R
S
A
V
------
G
I
N
L
P
R
Y
R
Q
M
V
S
E
R
Q
--
K
C
------------
29
HHSearch
38.07
17%
-71
- C5 -
-
1N9W
-
SYDND_THET8
B:
[2-122]
----------
R
V
L
V
R
D
L
K
A
H
V
G
Q
E
V
E
L
L
G
F
L
H
W
R
R
D
L
G
R
I
QF
L
L
L
R
D
R
--------
S
---
G
V
V
Q
V
V
T
G
G
---
L
K
-
L
--------
P
--
L
P
--
E
S
A
L
R
V
R
G
L
V
V
-
E
---------------------------------------------------------------