@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : UBQL2_HUMAN: (2020-02-03 )
MAENGESSGPPRPSRGPAAAQGSAAAPAEPKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKSQNRPQGQSTQPSNAAGTNTTSASTPRSNSTPISTNSNPFGLGSLGGLAGLSSLGLSSTNFSELQSQMQQQLMASPEMMIQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHLLNNPDIMRQTLEIARNPAMMQEMMRNQDLALSNLESIPGGYNALRRMYTDIQEPMLNAAQEQFGGNPFASVGSSSSSGEGTQPSRTENRDPLPNPWAPPPATQSSATTSTTTSTGSGSGNSSSNATGNTVAAANYVASIFSTPGMQSLLQQITENPQLIQNMLSAPYMRSMMQSLSQNPDLAAQMMLNSPLFTANPQLQEQMRPQLPAFLQQMQNPDTLSAMSNPRAMQALMQIQQGLQTLATEAPGLIPSFTPGVGVGVLGTAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGPNQQFIQQMVQALAGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAIERLLGSQPS
Atome Classification :
(20 SA)
.........10........20........30-.........-40........50........60......---..---70........80........90........100.......110.----...---------------------...120.......130.......140.......150.......160.......170.....---..180.......190.......200.......210.......220.......230..----.....240.......----250.......260.......270.......280.......290.......300.......310.......320.......330.......340.......350.......360.......370.......380.......390.......400.......410.......420.......430.......440.......450.......460.......470.......480.......490.......500.......510.......520.......530.......540.......550.......560.......570.......580.......590.......600.......610.......620..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MAENGESSGPPRPSRGPAAAQGSAAAPAE
P
--
K
I
I
K
V
T
VKT-PK
E
K
E
EFAVPENS
S
V
Q
Q
F
K
E
A
I
S
K
R
F
KS---QT---D
Q
L
V
L
I
FAGKILK
D
Q
D
T
L
I
Q
HGIHDG
L
T
V
H
L
V
I
KSQNRPQGQST----QPS---------------------NAAGTNTTSASTPRSNSTPISTNSNPFGLG
S
L
G
G
L
A
G
L
S
SLGLSST
N
F
S
E
L
Q
S
Q
M
Q
Q
Q
L
MA---
S
P
E
M
M
I
Q
I
M
E
N
P
F
V
Q
S
M
LS
N
P
D
L
M
R
Q
L
I
MA
N
P
Q
M
Q
Q
L
I
Q
RNP
E
I
S
H
LLN
N
P
D
I
M
R
Q
T
----
L
E
I
AR
N
P
A
M
M
Q
E
M
M
R----NQD
L
A
L
S
N
L
E
SIP
G
G
Y
N
A
L
R
R
M
Y
T
D
I
Q
E
P
M
L
N
A
A
Q
E
QFGGNPFASVGSSSSSGEGTQPSRTENRDPLPNPWAPPPATQSSAT
T
S
T
T
TSTGSGSGNSSSNATGNT
V
A
A
A
N
Y
V
A
S
I
FSTP
G
M
Q
S
L
L
Q
Q
ITE
N
P
Q
L
I
Q
N
M
LS
A
P
Y
M
R
S
M
M
Q
S
L
SQNP
D
L
A
A
Q
M
M
LNSPLFTAN
P
Q
L
Q
E
Q
MR
P
Q
L
P
A
F
L
Q
Q
MQNPD
T
L
S
AMSN
P
R
A
M
Q
A
L
M
Q
I
Q
Q
G
L
Q
T
L
A
TEAPGLIPSFTPGV
G
V
G
V
L
G
TAIGPVGPVTPIGPIGPIVPFTPIGPIGPIGPTGPAAPPGSTGSGGPTGPTVSSAAPSETTSPTSESGP
N
Q
Q
F
I
Q
Q
M
V
Q
A
L
AGANAPQLPN
P
E
V
R
F
Q
Q
Q
L
E
Q
L
N
A
MGFLNREA
N
L
Q
A
L
I
ATGG
D
I
N
A
A
I
E
R
L
LGSQPS
1
PsiBlast_PDB
85.32
100%
-131
- C3 -
-
1J8C
-
UBQL2_HUMAN
A:
[1-103]
M
A
E
N
G
E
S
S
G
P
P
R
P
S
R
G
P
A
A
A
Q
G
S
A
A
A
P
A
E
P
--
K
I
I
K
V
T
V
K
T
-
P
K
E
K
E
E
F
A
V
P
E
N
S
S
V
Q
Q
F
K
E
A
I
S
K
R
F
K
S
---
Q
T
---
D
Q
L
V
L
I
F
A
G
K
I
L
K
D
Q
D
T
L
I
Q
H
G
I
H
D
G
L
T
V
H
L
V
I
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
71.65
100%
-168
- C3 -
-
2NBV
-
UBQL2_HUMAN
B:
[1-78]
-------------------------
A
P
A
E
P
--
K
I
I
K
V
T
V
K
T
-
P
K
E
K
E
E
F
A
V
P
E
N
S
S
V
Q
Q
F
K
E
A
I
S
K
R
F
K
S
---
Q
T
---
D
Q
L
V
L
I
F
A
G
K
I
L
K
D
Q
D
T
L
I
Q
H
G
I
H
D
G
L
T
V
H
L
V
I
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
66.51
91%
-120
- C3 -
-
2KLC
-
UBQL1_HUMAN
A:
[23-101]
-----------------------------
P
--
K
I
M
K
V
T
V
K
T
-
P
K
E
K
E
E
F
A
V
P
E
N
S
S
V
Q
Q
F
K
E
E
I
S
K
R
F
K
S
---
H
T
---
D
Q
L
V
L
I
F
A
G
K
I
L
K
D
Q
D
T
L
S
Q
H
G
I
H
D
G
L
T
V
H
L
V
I
K
T
Q
N
R
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
65.70
66%
-159
- C3 -
-
1YQB
-
UBQL3_HUMAN
A:
[19-98]
-----------------------------
P
--
H
L
I
K
V
T
V
K
T
-
P
K
D
K
E
D
F
S
V
T
D
T
C
T
I
Q
Q
L
K
E
E
I
S
Q
R
F
K
A
---
H
P
---
D
Q
L
V
L
I
F
A
G
K
I
L
K
D
P
D
S
L
A
Q
C
G
V
R
D
G
L
T
V
H
L
V
I
K
R
Q
H
R
A
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
53
Fugue
65.63
15%
67
- C2 -
-
1OQY
-
RD23A_HUMAN
A:
[1-363]
--------------------------------
S
A
V
T
I
T
L
K
T
L
Q
Q
Q
T
F
K
I
R
M
E
P
D
E
T
V
K
V
L
K
E
K
I
E
A
E
K
G
R
---
D
A
FPV
A
G
Q
K
L
I
Y
A
G
K
I
L
S
D
D
V
P
I
R
D
Y
R
I
D
E
K
N
F
V
V
V
M
V
T
K
T
K
A
G
Q
G
T
S
A
----
P
P
E
ASPTAAPESSTSFPPAPTSGM
S
H
P
P
P
A
A
R
E
D
K
S
P
S
E
E
S
A
P
T
T
S
P
E
S
V
S
G
S
V
P
S
S
G
S
S
G
R
E
E
D
A
A
S
T
L
V
T
G
S
E
Y
E
T
M
L
T
E
I
M
S
MGY
E
R
E
R
V
V
A
A
L
R
A
S
Y
-----
N
N
P
H
R
A
V
E
Y
L
L
T
G
I
P
G
S
P
E
P
E
H
G
S
V
Q
E
S
Q
V
S
E
Q
P
A
T
E
A
A
GENP
L
E
F
L
R
D
Q
P
Q
F
Q
N
M
R
Q
VIQQ
N
P
A
L
L
P
A
L
L
Q
Q
L
G
Q
E
N
P
Q
L
L
Q
Q
I
S
R
H
Q
E
Q
F
I
Q
M
L
N
E
P
P
G
E
L
A
D
I
S
D
V
E
G
E
V
G
A
I
G
E
E
A
P
Q
M
N
Y
I
Q
V
T
P
Q
E
K
E
A
I
E
R
L
K
A
L
G
F
P
E
S
L
V
I
Q
A
Y
F
A
C
E
K
N
E
N
L
A
A
N
F
L
L
S
Q
N
F
D
D
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
65.53
46%
-132
- C3 -
-
1WX8
-
?
A:
[1-96]
---------------
G
S
S
G
S
S
G
V
S
G
R
E
P
S
S
--
R
I
I
R
V
S
V
K
T
-
P
Q
D
C
H
E
F
F
L
A
E
N
S
N
V
R
R
F
K
K
Q
I
S
K
Y
L
H
C
---
N
A
---
D
R
L
V
L
I
F
T
G
K
I
L
R
D
Q
D
I
L
S
Q
R
G
I
L
D
G
S
T
V
H
V
V
V
R
S
H
S
G
P
S
S
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
65.49
62%
-142
- C3 -
-
1WX7
-
UBQL3_HUMAN
A:
[14-101]
----------------------------
D
P
--
H
L
I
K
V
T
V
K
T
-
P
K
D
K
E
D
F
S
V
T
D
T
C
T
I
Q
Q
L
K
E
E
I
S
Q
R
F
K
A
---
H
P
---
D
Q
L
V
L
I
F
A
G
K
I
L
K
D
P
D
S
L
A
Q
C
G
V
R
D
G
L
T
V
H
L
V
I
K
R
Q
H
R
A
M
G
N
E
C
----
P
A
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
54.67
43%
-153
- C3 -
-
2BWF
2
?
A:
[5-76]
----------------------------------
L
N
I
H
I
K
S
-
G
Q
D
K
W
E
V
N
V
A
P
E
S
T
V
L
Q
F
K
E
A
I
N
K
A
N
G
I
---
P
V
---
A
N
Q
R
L
I
Y
S
G
K
I
L
K
D
D
Q
T
V
E
S
Y
H
I
Q
D
G
H
S
V
H
L
V
-
K
S
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
53.88
43%
-162
- C3 -
-
3M63
-
DSK2_YEAST
B:
[29-100]
----------------------------------
L
N
I
H
I
K
S
-
G
Q
D
K
W
E
V
N
V
A
P
E
S
T
V
L
Q
F
K
E
A
I
N
K
A
N
G
I
---
P
V
---
A
N
Q
R
L
I
Y
S
G
K
I
L
K
D
D
Q
T
V
E
S
Y
H
I
Q
D
G
H
S
V
H
L
V
-
K
S
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
51.92
43%
-130
- C3 -
-
2BWE
-
?
S:
[3-74]
----------------------------------
L
N
I
H
I
K
S
-
G
Q
D
K
W
E
V
N
V
A
P
E
S
T
V
L
Q
F
K
E
A
I
N
K
A
N
G
I
---
P
V
---
A
N
Q
R
L
I
Y
S
G
K
I
L
K
D
D
Q
T
V
E
S
Y
H
I
Q
D
G
H
S
V
H
L
V
-
K
S
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
49
Fugue
49.78
18%
-79
- C3 -
-
2DAF
-
A:
[1-118]
---------------
G
S
S
G
S
S
G
Q
E
S
V
E
D
S
L
--
A
T
V
K
V
V
L
I
P
-
V
G
Q
E
I
V
I
P
F
K
V
D
T
I
L
K
Y
L
K
D
H
F
S
H
L
L
G
I
---
P
H
---
S
V
L
Q
I
R
Y
S
G
K
I
L
K
N
N
E
T
L
V
Q
H
G
V
K
P
Q
E
I
V
Q
V
E
I
F
S
T
N
P
D
L
Y
P
V
R
----
R
I
D
---------------------
G
L
T
D
V
S
Q
I
I
T
V
S
G
P
S
S
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
46.42
15%
-140
- C3 -
-
1V86
-
A:
[12-90]
--------------------------
G
V
G
K
--
E
L
V
D
L
K
I
I
W
-
N
K
T
K
H
D
V
K
V
P
L
D
S
T
G
S
E
L
K
Q
K
I
H
S
I
T
G
L
---
P
P
---
A
M
Q
K
V
M
Y
K
G
L
V
P
-
E
D
K
T
L
R
E
I
K
V
T
S
G
A
K
I
M
V
V
G
S
T
I
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
46.09
33%
-97
- C3 -
-
6GLC
2
PRKN_HUMAN
A:
[19-342]
--------------------------------------------------
V
D
S
D
T
S
I
F
Q
L
K
E
V
V
A
K
R
Q
G
V
---
P
A
---
D
Q
L
R
V
I
F
A
G
K
E
L
R
N
D
W
T
V
Q
N
C
D
L
D
Q
Q
S
I
V
H
I
V
Q
R
P
W
R
K
G
Q
E
M
N
A
TGGD
D
P
R
---------------------
N
A
A
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
45.65
54%
35
- C3 -
-
1WX8
-
?
A:
[12-93]
----------------------------
E
P
SS
R
I
I
R
V
S
V
K
T
-
P
Q
D
C
H
E
F
F
L
A
E
N
S
N
V
R
R
F
K
K
Q
I
S
K
Y
L
H
C
---
N
A
---
D
R
L
V
L
I
F
T
G
K
I
L
R
D
Q
D
I
L
S
Q
R
G
I
L
D
G
S
T
V
H
V
V
V
R
S
H
S
G
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
Fugue
43.65
26%
-1
- C3 -
-
1X1M
-
UBL7_MOUSE
A:
[1-107]
----
G
S
S
G
S
S
G
M
S
L
S
D
W
H
L
A
V
K
L
A
D
Q
P
L
A
P
--
K
---
S
I
L
Q
L
-
P
E
T
E
L
G
E
Y
S
L
G
G
Y
S
I
S
F
L
K
Q
L
I
A
G
K
L
Q
E
SVP
D
P
---
E
L
I
D
L
I
Y
C
G
R
K
L
K
D
D
Q
T
L
D
F
Y
G
I
Q
P
G
S
T
V
H
V
L
R
K
S
W
S
G
P
S
S
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
41.90
17%
-136
- C3 -
-
5D6J
-
SMT3_YEAST
B:
[3-73]
---------------------------------
H
I
N
L
K
V
S
D
-
G
S
S
E
I
F
F
K
I
K
K
T
T
P
L
R
R
L
M
E
A
F
A
K
R
Q
G
K
---
E
M
---
D
S
L
R
F
L
Y
D
G
I
R
I
Q
A
D
Q
T
P
E
D
L
D
M
E
D
N
D
I
I
E
A
H
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
41.88
15%
-120
- C3 -
-
2EKE
-
SMT3_YEAST
C:
[1017-1095]
-------------------------
E
V
K
P
E
--
T
H
I
N
L
K
V
S
D
-
G
S
S
E
I
F
F
K
I
K
K
T
T
P
L
R
R
L
M
E
A
F
A
K
R
Q
G
K
---
E
M
---
D
S
L
R
F
L
Y
D
G
I
R
I
Q
A
D
Q
T
P
E
D
L
D
M
E
D
N
D
I
I
E
A
H
R
E
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
40.71
90%
-130
- C3 -
-
2JY5
-
UBQL1_HUMAN
A:
[537-586]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
E
F
Q
N
P
E
V
R
F
Q
Q
Q
L
E
Q
L
S
A
M
G
F
L
N
R
E
A
N
L
Q
A
L
I
A
T
G
G
D
I
N
A
A
I
E
R
L
L
G
S
---
37
HHSearch
40.37
16%
-121
- C3 -
-
3TIX
-
SMT3_YEAST (first)
C:
[55-136]
-----------------------------
E
--
T
H
I
N
L
K
V
S
D
-
G
S
S
E
I
F
F
K
I
K
K
T
T
P
L
R
R
L
M
E
A
F
A
K
R
Q
G
K
---
E
M
---
D
S
L
T
F
L
Y
D
G
I
E
I
Q
A
D
Q
T
P
E
D
L
D
M
E
D
N
D
I
I
E
A
H
R
E
Q
I
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
40.29
90%
-122
- C3 -
-
2JY6
-
UBQL1_HUMAN
B:
[537-586]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
E
F
Q
N
P
E
V
R
F
Q
Q
Q
L
E
Q
L
S
A
M
G
F
L
N
R
E
A
N
L
Q
A
L
I
A
T
G
G
D
I
N
A
A
I
E
R
L
L
G
S
---