@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2019-03-29 )
KVKKICHYSIQKLHGKTWYQVGTGQADAGKDTHIEGTKVFFSDQCLPQWNN
Atome Classification :
(20 SA)
----------------------------------------------------------------......-...---10--....--.--.-----..20-...---.---....30--....-..-..-.40---.---.------......50----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------KVKKIC-HYS---IQ--KLHG--K--T-----WYQV-GTG---Q---ADAGK---DTHI-EG-TK-VFF---S---D------QCLPQWNN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
68.48
25%
16
- C6 -
-
4ZRX
7
?
A:
[5-584]
--------------------------E
N
Y
Y
V
K
H
V
E
F
PQSAT
I
E
Q
K
V
D
M
A
A
R
L
V
P
T
P
Q
Q
Y
A
W
Q
Q
M
E
L
T
A
F
L
-
H
F
G
---
I
N
--
T
F
T
G
--
R
--
E
-----
W
----
G
D
G
---
K
---
E
D
P
A
L
---
F
N
-----------
P
---
S
---
E
------
L
D
A
E
Q
W
V
R
T
L
K
E
A
GFK
M
V
L
L
TAKHHDGFCLWPTATTKHSVASSPWKNGQGD
V
V
K
E
L
R
A
A
C
D
K
Y
D
M
K
F
G
V
Y
L
S
PWDRNAECYGD
S
P
R
Y
N
D
F
F
I
R
Q
L
T
E
L
L
T
NYGEVH
E
V
W
F
D
GANGEGPNGKKQVYD
W
D
A
F
Y
Q
T
I
Q
R
L
QPK
A
V
M
A
IMGDDVRWVGNEKGVGRETEWNATVLTPGIYAR
S
Q
E
N
N
K
R
L
GVFSKAEDLGSRKILEKATELFW
Y
P
S
E
V
D
V
S
IRPGWFYHAEEDGKVKS
L
K
H
L
S
D
I
Y
F
Q
S
V
GYN
S
V
L
L
L
N
I
P
P
D
RRGLIH
E
A
D
I
K
R
L
K
E
F
A
D
Y
R
Q
Q
T
F
ADNRVKNGRK
Y
W
S
T
T
S
G
G
E
A
V
Y
A
L
K
S
KSEIN
L
V
M
L
Q
E
DITKGQRVE
A
F
T
V
E
A
L
T
DNGWKEV
G
K
G
T
T
IGY
K
R
M
L
R
F
P
A
V
N
A
N
K
L
R
V
R
IDECRL
T
A
Y
V
S
Q
V
A
A
Y
Y
A
E
P
L
Q
E
E
TTKEDWNNLPRSGWKQVAASPLTIDLG
K
T
V
T
L
S
S
F
T
Y
A
P
S
KAEVKPTMAF
R
Y
Q
F
F
V
S
MDGK
S
W
K
E
V
PASGEFSNIMHNP
L
P
Q
T
V
A
F
S
Q
K
V
Q
A
R
F
I
K
L
E
A
T
T
PDA
T
V
A
K
V
N
MNE
I
G
V
M
V
I-----------------------------------------------------------
18
SP3
65.96
27%
73
* C9 *
0.19
1D1L
-
RCRO_LAMBD
A:
[1-61]
----------------------------------------------------------------
M
E
Q
R
I
T
-
L
K
D
---
Y
A
--
M
R
F
G
Q
T
K
--
T
-----
A
K
D
L
-
G
V
Y
---
Q
---
S
A
I
N
K
---
A
I
H
--
A
G
-
R
K
-
I
F
L
---
T
I
N
A
D
G
S
V
Y
A
E
E
V
K
P
W
P
S
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
63.23
25%
53
- C8 -
-
1AFP
-
?
?:
[1-51]
--------------------------------------------------------A
T
Y
N
G
K
C
Y
K
K
D
N
I
C
-
K
Y
K
---
A
Q
--
S
--
G
--
K
--
T
----------
A
I
C
---
K
---
C
Y
V
K
K
---
C
P
R
--
D
G
-
A
K
-
C
E
F
D
SY
K
---
G
------
K
C
Y
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
60.38
23%
9
- C9 -
0.18
4NSS
-
?
A:
[29-148]
P
A
K
T
L
E
A
V
S
A
V
ADWLRDPQ
R
E
S
P
A
R
A
Q
L
A
E
A
V
R
L
T
A
R
T
L
A
A
V
A
PGAS
V
E
V
R
V
P
PF
V
A
V
Q
C
I
S
GG
T
P
P
N
V
V
-
E
T
D
----------
A
--
R
--
T
-----
W
L
L
L
-
A
T
G
---
L
LDI
A
D
A
G
A
---
S
V
Q
M
-
S
G
-
S
R
-
A
A
E
---
V
---
A
------
H
W
L
P
V
V
R
I
DP--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
SP3
60.12
25%
105
* C8 *
-
1TFI
-
?
?:
[1-50]
----------------------------------------------------------------
K
T
G
G
T
Q
-
T
D
L
---
F
T
CG
K
C
K
K
--
K
N
C
T
-----
Y
T
Q
V
-
Q
T
R
---
S
---
A
D
-----------
E
P
-
M
T
-
T
F
V
---
V
C
--
N
------
E
C
G
N
R
W
K
F
C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
60.00
24%
-23
- C7 -
-
4RFU
3
?
A:
[7-123]
-----------A
P
I
M
T
Q
G
S
L
Y
NDSLSTNDFKSILLGS
T
P
L
D
I
APDG
A
V
F
Q
L
D
R
P
L
S
I
D
Y
S
LGTG
D
V
D
R
A
V
-
Y
W
H
---
L
K
--
K
F
A
G
--
N
--
A
GTPA
G
W
F
R
W
-
G
-----
I
---
W
D
N
F
N
---
K
T
F
T
-
D
G
-
V
A
--
Y
Y
---
S
---
D
------
E
---
Q
P
R
Q
ILLPVG
T
V
C
T
R
V
D
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
SP3
57.49
19%
126
- C8 -
-
1QYP
-
?
?:
[1-57]
----------------------------------------------------GS
H
M
E
Q
D
L
KT
L
P
T
T
K
I
T
C
--------
P
--
K
C
G
N
--
D
T
A
Y
-----
W
W
E
M
-
Q
T
R
---
A
---
G
D
-----------
E
P
-
S
T
-
I
F
Y
---
K
C
--
T
------
K
C
G
H
T
W
R
S
Y
E--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
57.30
23%
-57
* C13 *
-
1AVA
-
AMY2_HORVU
A:
[347-403]
------------------------------------------------------------HNE
S
K
L
Q
I
I
E
-
A
D
A
D
L
Y
L
A
--
E
I
D
G
--
K
--
V
-----
I
V
K
L
-
G
P
----
R
---
Y
D
V
G
-----
N
L
I
P
G
G
-
F
K
-
V
A
A
---
H
---
G
------
N
D
Y
A
V
W
E
K
I---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
56.46
31%
49
- C5 -
-
3SSB
-
IMPI_GALME
C:
[6-40]
-------------------------------------------------------------------
L
I
C
-
N
-----------
G
G
--
H
--
E
-----
Y
Y
E
C
-
G
G
A
---
C
---
D
N
V
C
A
---
D
L
H
I
-
Q
N
----------
K
---
T
------
N
C
-
P
I
I
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
56.02
23%
29
- C10 -
-
1BRZ
-
?
?:
[2-54]
---------------------------------------------------------------D
K
C
K
K
V
Y
E
N
Y
P
---
V
S
--
K
C
Q
L
--
A
--
N
-------
Q
C
-------
N
---
Y
D
C
K
L
---
D
K
H
A
-
R
S
-
G
E
-
C
F
Y
---
D
---
E
K
R
N
L
--
Q
C
I
C
D
Y
C
E
Y---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
SP3
55.73
13%
104
- C7 -
-
1PCF
-
TCP4_HUMAN
A:
[62-127]
-------------------------------------------------------------AMF
Q
I
G
K
M
R
-
Y
V
S
---
V
R
--
D
F
K
G
--
K
--
V
-----
L
I
D
I
-
R
E
Y
---
W
---
M
D
P
E
G
---
E
M
K
P
-
G
R
-
K
G
-
I
S
L
---
N
---
P
------
E
---
Q
W
S
Q
L
K
E
Q
I
S
D
I
D
D
A
V
R
K
L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
HHSearch
52.65
23%
-29
- C13 -
-
1CMI
-
DYL1_HUMAN
A:
[43-73]
------------------------------------------------------------------------------
D
--
K
K
Y
N
--
P
--
T
-----
W
-
H
C
-
I
V
G
---
R
---
N
F
G
S
Y
---
V
T
H
E
-
T
K
-
H
F
-
I
Y
F
---
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
SP3
51.28
23%
165
* C7 *
-
1AUU
-
SACY_BACSU
A:
[1-55]
---------------------------------------------------------------M
K
I
K
R
I
L
-
N
H
N
A
I
-
V
V
--
K
D
Q
N
--
E
--
E
-----
K
I
L
L
-
G
A
G
IAF
N
---
K
K
K
N
D
IVD
P
S
K
I
-
E
---
K
-
T
F
I
R
--
K
---
D
------
T
--
P
D
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
Fugue
51.18
19%
98
- C7 -
-
5BND
-
?
A:
[1-179]
-------------------------------------------TYE
E
K
L
A
Y
G
L
ALD
G
S
V
T
L
N
G
S
K
D
L
K
V
P
-
K
Y
S
---
L
I
--
T
I
T
G
--
E
NN
K
-----
R
Y
R
V
-
E
M
N
----------
Q
R
---
R
Y
S
V
-
S
K
-
N
Q
V
F
Y
F
---
N
---
P
------
A
G
L
Y
E
S
H
T
FKKLSPYIKSNYSTY
V
E
Y
F
N
S
HLHQK
H
D
K
V
T
E
TLRPD
K
D
K
K
Y
V
V
P
I
T
QQP
I
K
M
I
F
G
D
NDKLS
G
F
V
I
P
M
T
N
K
T
E
L
K
K
T
FNITKD
V
W
I
T
K
S
GS
G
Y
F
I
A
DMKEE
K
W
I
Y
I
E
L----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
HHSearch
50.49
23%
4
- C13 -
-
2XQQ
-
DYL2_HUMAN
D:
[47-77]
------------------------------------------------------------------------------
D
--
K
K
Y
N
--
P
--
T
-----
W
-
H
C
-
I
V
G
---
R
---
N
F
G
S
Y
---
V
T
H
E
-
T
K
-
H
F
-
I
Y
F
---
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
48.64
21%
-73
* C10 *
-
1JB3
-
AGRIN_CHICK
A:
[6-132]
------------------------E
L
Q
R
R
E
E
E
A
N
V
V
L
T
G
T
V
E
E
I
M
N
V
DPVHH
T
Y
S
C
K
V
R
V
WRYL
K
G
K
D
I
V
-
T
H
E
---
I
L
--
L
D
G
G
--
N
--
K
-----
V
V
I
G
-
G
F
G
---
D
---
P
L
I
C
D
---
N
Q
V
S
-
T
G
D
T
R
-
I
F
F
---
V
---
N
------
P
A
P
Q
Y
M
W
P
AHRN
E
L
M
L
N
S
S
L
M
R
IT
L
R
N
L
E
E
V
E
H
C
V
E
E
H
R
KLLA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
48.42
26%
91
- C9 -
0.21
4CCZ
1
METH_HUMAN
A:
[4-638]
------------------------------------------------------------T
L
R
D
E
I
N
A
I
L
-
Q
K
R
---
I
M
--
V
L
D
G
--
G
-----------
M
-
G
T
M
---
I
---
Q
R
E
K
L
---
E
E
H
F
-
R
G
-
Q
E
---
F
---
K
---
D
------
H
A
R
P
L
K
G
N
NDILSITQ
P
D
V
I
Y
Q
I
H
K
E
Y
L
L
AD
I
I
E
T
NTFSSTSIAQADYGLEHL
A
Y
R
M
N
M
C
S
A
G
V
A
R
K
A
A
E
E
V
T
L
Q
T
G
I
K
R
F
V
A
G
A
L
G
PTNKTLSVSPSVERPDYRNIT
F
D
E
L
V
E
A
Y
Q
E
Q
A
K
G
L
L
D
G
GVDILLIETIFD
T
A
N
A
K
A
A
L
F
A
L
Q
N
L
F
EEKYAP
R
P
I
F
I
S
G
T
I
V
D
KSGRTLSGQT
G
E
G
F
V
I
S
V
SHGEPL
C
I
G
L
N
C
ALGAAEMR
P
F
I
E
I
I
G
K
C
T
T
A
Y
V
L
C
Y
P
N
A
GFAMDGLVN
I
V
G
G
C
CGST
P
D
H
I
R
E
I
A
E
A
V
K
NCKPRVPPATAFEGHM
L
L
S
G
L
E
P
F
R
I
G
PYT
N
F
V
N
I
G
ERCNVAGS
R
K
F
A
K
L
I
M
A
GN
Y
E
E
A
L
C
V
A
K
V
Q
V
E
M
GAQ
V
L
D
V
N
MDDGMLD
G
P
S
A
M
T
R
F
C
N
L
I
A
S
E
PDIAK
V
P
L
C
I
D
S
SN
F
A
V
I
E
A
G
L
K
C
CQ
G
K
C
I
V
NSISLKEG
E
D
D
F
L
E
K
A
R
K
I
K
K
Y
G
A
A
M
V
V
M
AFDEEGQATE
T
D
T
K
I
R
V
C
T
R
A
Y
H
L
L
V
KKLGFNPND
I
I
F
D
PNILTIGTGMEEHNL
Y
A
I
N
F
I
H
A
T
K
V
I
K
E
T
L
PG
A
R
I
S
G
GLSNLSFSFRGM
E
A
I
R
E
A
M
H
G
V
F
L
Y
H
A
I
K
S
GMDMGIVNAGNLPVYDDIH
K
E
L
L
Q
L
C
E
D
L
I
W
NKDPE
A
T
E
K
L
L
R
YAQ
17
SP3
46.56
15%
30
- C9 -
-0.07
1GDT
-
TNR1_ECOLI
A:
[141-183]
---------------------------------------------------------------G
R
K
R
K
I
D
-
R
D
A
---
V
L
--
N
M
W
Q
--
Q
-------------
G
L
G
---
A
---
S
H
I
S
K
---
T
M
N
I
-
A
R
-
S
T
-
V
Y
---------------
K
V
I
N
E
S
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
46.53
21%
-8
- C11 -
-
2M5J
-
?
A:
[6-112]
-------------------------------------SMAQA
A
Q
Q
K
N
F
N
I
A
AQP
L
Q
S
A
M
L
R
F
A
E
Q
A
G
M
Q
V
-
F
F
D
---
E
V
--
K
L
D
G
--
M
--
Q
-----
A
A
A
L
N
G
S
M
---
S
---
V
E
Q
G
L
---
R
R
L
I
-
G
G
-
N
P
-
V
A
F
---
R
---
L
------
Q
P
Q
G
Q
I
V
L
S
R
L
P
TANGDGGALAL
D
S
L
T
V
LGAGGNNA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
46.53
15%
-67
- C9 -
0.02
1H2S
-
HTR2_NATPH
B:
[1-60]
----------------------------------------------------------------
G
A
V
F
I
F
-
V
G
A
---
L
T
--
V
L
F
G
--
A
--
I
-----
A
Y
G
E
-
V
T
A
---
A
---
A
A
T
G
D
---
A
A
A
V
-
Q
E
-
A
A
-
V
S
A
---
I
---
L
------
G
L
I
I
L
L
G
I
N
L
G
L
V
A
A
T
L-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------