@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : GN0001_114280T0_kcl25: (2019-03-29 )
FDCTIERRLGTQTKARARTSAKAMPEMIPAESGKYTVIAGTRVWVYGDCRTYPTHLPDGSTISGRAF
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...----......10-.......----..20.....-.----..30........40-.---.......--.50-......-.-.60......
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FD
C
----
T
I
ERRLG--TQ
T
K
ARA----R
T
S
A
K
AM
P
E
-M----IPAESG
K
Y
T
V
I
AG--
T
---
R
V
W
V
Y
GD--CRT-YPTHLP-D-GSTISGRAF
35
Fugue
64.78
26%
73
- C2 -
-
4LYP
3
?
A:
[34-449]
SEFAFVKIASDGKGFTRYGEPYLIRGANYWQGMNLGADDCSGGDRKRMELEIKQMAEMGINNLRVMASSEGPDDQPYRMRPSMMPQPGKYNEGVFVGLDYLLDTMDRYNMTAVMTLGNFWQWSGGFGQYVAWITGNQTIPYPVGDVTYDEFTQFAARFYNDSEIAPKANKLFKDHIYTVQNRRNTVNGKIYKEDPVIMSWQIANEPQEAPASWFEEISTFIKKGAPKHLVSAGLESKLDEYDFDRAHDHKNIDYTTCHCWVENWGIYDPADPDGLPHANEYMHDFLESRSKWAAQLNKPIVMEEFGMARDAWRNP
E
D
E
----
T
Y
K
Y
L
P
S
--
T
P
T
S
H
K
D
----
E
Y
Y
Q
K
A
F
N
Q
-
I
----
V
S
L
A
S
N
R
S
--
F
S
G
--
S
---
N
F
W
A
Y
G
G
EG
R
S
T
-
Y
P
P
N
-
P
-
Y
-
G
M
V
W
L
G
D
P
P
4
PsiBlast_PDB
58.23
37%
-231
- C5 -
0.26
3JTR
-
?
B:
[287-315]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
----
T
L
E
R
F
M
A
--
L
Q
L
S
H
R
A
----
V
M
A
D
R
T
L
P
D
-
L
----
I
P
A
-----------------------------------------------
11
PsiBlast_PDB
56.92
37%
-211
- C5 -
0.19
2AE3
-
?
B:
[287-315]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
----
T
L
E
R
F
M
A
--
L
Q
L
S
H
R
A
----
V
M
A
D
R
T
L
P
D
-
L
----
I
P
A
-----------------------------------------------
7
PsiBlast_PDB
56.80
37%
-219
- C5 -
0.24
4E57
-
?
A:
[452-480]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
----
T
L
E
R
F
M
A
--
L
Q
L
S
H
R
A
----
V
M
A
D
R
T
L
P
D
-
L
----
I
P
A
-----------------------------------------------
3
PsiBlast_PDB
56.61
37%
-195
- C5 -
0.25
2AE4
-
?
B:
[287-315]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
----
T
L
E
R
F
M
A
--
L
Q
L
S
H
R
A
----
V
M
A
D
R
T
L
P
D
-
L
----
I
P
A
-----------------------------------------------
8
PsiBlast_PDB
55.95
37%
-204
- C5 -
0.21
4E55
-
?
A:
[448-476]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
----
T
L
E
R
F
M
A
--
L
Q
L
S
H
R
A
----
V
M
A
D
R
T
L
P
D
-
L
----
I
P
A
-----------------------------------------------
5
PsiBlast_PDB
55.78
37%
-199
- C5 -
0.25
2AE5
-
?
B:
[287-315]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
----
T
L
E
R
F
M
A
--
L
Q
L
S
H
R
A
----
V
M
A
D
R
T
L
P
D
-
L
----
I
P
A
-----------------------------------------------
6
PsiBlast_PDB
55.63
37%
-206
- C5 -
0.21
4E56
-
?
A:
[450-478]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
----
T
L
E
R
F
M
A
--
L
Q
L
S
H
R
A
----
V
M
A
D
R
T
L
P
D
-
L
----
I
P
A
-----------------------------------------------
10
PsiBlast_PDB
55.20
37%
-180
- C5 -
0.21
3JTQ
-
?
B:
[287-315]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
----
T
L
E
R
F
M
A
--
L
Q
L
S
H
R
A
----
V
M
A
D
R
T
L
P
D
-
L
----
I
P
A
-----------------------------------------------
1
PsiBlast_PDB
55.03
37%
-192
- C5 -
0.22
1GK1
-
?
B:
[287-315]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
----
T
L
E
R
F
M
A
--
L
Q
L
S
H
R
A
----
V
M
A
D
R
T
L
P
D
-
L
----
I
P
A
-----------------------------------------------
9
PsiBlast_PDB
54.91
37%
-168
* C5 *
0.18
3S8R
-
?
A:
[456-484]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
----
T
L
E
R
F
M
A
--
L
Q
L
S
H
R
A
----
V
M
A
D
R
T
L
P
D
-
L
----
I
P
A
-----------------------------------------------
15
HHSearch
52.71
43%
-157
- C4 -
-
2MYV
-
?
A:
[50-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
E
--
Y
---
K
V
F
V
N
E
A
--
C
H
P
-
Y
P
V
I
L
P
-
D
-
R
S
V
L
S
G
D
--
14
HHSearch
52.33
43%
-166
* C4 *
-
5ZNG
-
?
C:
[30-57]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
E
E
--
Y
---
K
V
F
V
N
E
A
--
C
H
P
-
Y
P
V
I
L
P
-
D
-
R
S
V
L
S
G
D
--
58
SP3
52.21
23%
-46
- C2 -
-
1A0A
-
PHO4_YEAST
A:
[1-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
R
----
E
S
H
K
H
A
E
--
Q
A
R
R
N
R
L
----
A
V
A
L
H
E
L
A
S
-
L
----
I
P
A
E
W
K
Q
Q
N
V
S
A
A
PS
K
---
A
T
T
V
E
A
A
--
C
R
--
Y
I
R
H
L
Q
Q
N
-
G
S
T
------
44
Fugue
51.72
14%
8
- C2 -
-
1FM0
-
MOAD_ECOLI
D:
[1-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIKVL
F
F
A
----
Q
V
R
E
L
V
G
TD
A
T
E
V
A
A
D
----
F
P
T
V
E
A
L
R
Q
-
H
----
M
A
A
Q
S
D
R
W
A
L
A
L
E
--
D
GKL
L
A
A
V
N
Q
T
--
L
V
S
-
F
D
H
P
L
T
-
D
-
G
D
E
V
A
F
F
P
P
37
Fugue
50.69
14%
0
- C2 -
-
1JW9
-
MOAD_ECOLI
D:
[1-81]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIKVL
F
F
A
----
Q
V
R
E
L
V
G
TD
A
T
E
V
A
A
D
----
F
P
T
V
E
A
L
R
Q
-
H
----
M
A
A
Q
S
D
R
W
A
L
A
L
E
--
D
GKL
L
A
A
V
N
Q
T
--
L
V
S
-
F
D
H
P
L
T
-
D
-
G
D
E
V
A
F
F
P
P
52
SP3
47.80
17%
59
- C2 -
-
1DWM
1
ICI_LINUS
A:
[1-69]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
R
R
C
PGKN
A
W
P
E
L
V
G
--
K
S
G
N
M
A
A
----
A
T
V
E
R
E
N
R
N
-
V
HAIV
L
K
E
G
S
A
M
T
K
D
F
R
C
--
D
---
R
V
W
V
I
V
N
--
D
H
G
-
V
V
T
S
V
P
-----
H
I
T
----
45
Fugue
46.08
20%
20
- C2 -
-
4D7E
1
?
A:
[1-413]
-----------------------------------------------------------------------------------------------------------------------------------METLLVVGAGPKALAVAAKSHVLRQLGLSAPRVIAVEAHAVGGNWLASGGWTDGRHRLGTSPEKDIGFPYHSTWARGHNREINEAMMAFSWTSFLVEHGTYAEWIDRGRPSPQHHVWAKYLQWVARKIDLELVLGKVRTIRQGWSVEVAGATTELEADGLMITGPGQSTKALAAHPRVLSIAEF
W
D
L
----
A
G
K
R
K
L
P
--
I
S
S
R
A
A
V
IGGG
E
T
A
G
S
A
L
D
E
-
L
----
V
R
H
E
M
L
T
I
S
V
I
S
P
--
M
---
A
S
Y
F
E
N
S
--
L
F
S
-
D
P
T
K
W
N
-
A
-
L
S
I
Q
E
R
R
D
V
55
SP3
45.89
14%
-26
- C2 -
-
1CSE
-
ICIC_HIRME
I:
[8-70]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
----
S
F
P
E
V
V
G
--
K
T
V
D
Q
A
R
----
E
Y
F
T
L
H
Y
P
Q
-
Y
NVYF
L
P
E
G
S
P
V
T
L
D
L
R
Y
--
N
---
R
V
R
V
F
Y
N
--
P
G
T
N
V
V
N
H
V
P
-----
H
V
G
----
54
SP3
44.84
19%
38
- C2 -
-
1LUJ
-
CNBP1_HUMAN
B:
[5-75]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
A
P
A
----
K
S
P
E
E
M
Y
--
I
Q
Q
K
V
R
V
----
L
L
M
L
R
K
M
G
S
N
L
----
T
A
S
E
E
E
F
L
R
T
Y
A
G
--
V
------
V
S
S
Q
--
L
S
Q
-
L
P
Q
H
S
I
-
D
Q
A
A
E
D
V
V
M
A
F