@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : IR0088_035730T0_kcl55: (2019-03-29 )
NDSDCHIWIKDNSDIVFGYSKAVTGQTAVVEISQGPHKKEQFKFATAADQTNKKDCTAGLAGERSFPAGWRIKTF
Atome Classification :
(20 SA)
------------------------------------------....-.----....10-..-..--.....20---.-------------.....---..--30.---....--..-.40.....-...50...--.....60---------......-..---------.70..-..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------NDS
D
-
C
----
H
I
W
I
K--DN-S
D
--
I
V
F
G
YSK---A-------------VTG
Q
T
---
A
V
--
V
E
I---SQGP--H
K
-
K
E
Q
F
K
F
AT-AADQTNKK--DCTAGL----------AGERSF-PA---------GW
R
I
K-TF
31
Fugue
73.28
14%
-106
- C7 -
0.42
1GG3
-
41_HUMAN
A:
[1-81]
--------------------------------------------
M
H
-
C
----
K
V
S
L
L
--
D
D
-
T
V
--
Y
E
C
V
V
E
K
---
H
-------------
A
K
G
Q
D
---
L
L
--
K
R
V
---
C
E
H
L
--
N
L
-
L
E
E
D
Y
F
G
L
-
A
I
W
D
N
--
A
--
T
S
K
T
W
L
----------
D
S
A
K
E
I
-
K
K
QVRGVPWNF
T
F
N
V
K
-
F
Y
37
SP3
72.95
20%
56
- C7 -
0.34
1WM2
-
SUMO2_HUMAN
A:
[12-89]
-----------------------------------------T
E
N
N
D
H
I
----
N
L
K
V
A
GQ
D
G
-
S
V
--
V
Q
F
K
I
K
R
---
H
-------------
T
P
L
S
K
----
L
--
M
K
A
YCE
R
Q
G
---
L
S
-
M
R
Q
I
R
F
R
F
-
D
G
Q
P
I
N
E
T
--
D
T
P
A
Q
L
----------
E
M
E
-----
D
---------
E
D
T
I
D
-
V
F
26
Fugue
69.50
16%
-124
- C8 -
-
3L9A
1
?
X:
[9-88]
-----------------------------------------------
R
----
D
F
F
V
I
--
T
N
-
S
E
--
Y
T
F
A
G
V
H
---
Y
-------------
A
K
G
-----
A
V
--
L
H
V
---
S
--
P
--
T
Q
-
K
-
R
A
F
W
V
I
-
A
D
Q
E
N
F
I
K
--
Q
V
N
K
N
I
----------
E
Y
V
E
K
N
-
A
S
---------
P
A
F
L
Q
-
R
I
43
SP3
65.96
20%
-20
- C7 -
0.40
1JI2
-
NEPU2_THEVU
A:
[503-585]
--------------------------------------------
G
N
-
V
----
R
S
W
H
A
--
D
K
-
Q
A
--
N
L
Y
A
F
V
R
---
T
-------------
V
Q
D
Q
H
---
V
G
--
V
V
L
---
N
N
R
G
--
E
K
---
Q
T
V
L
L
Q
-
V
P
E
S
G
G
K
T
WL
D
C
---
L
----------
T
G
E
E
V
H
-
G
K
---------
Q
G
Q
L
K
L
T
L
19
Fugue
64.54
14%
-74
- C7 -
0.39
2MM2
-
?
A:
[1-65]
---------------------------------------------
N
-
C
----
T
A
N
I
L
--
N
I
-
N
E
--
V
V
I
A
T
G
C
---
V
-------------
P
A
G
G
N
---
L
I
--
I
R
V
---
G
S
D
H
--
S
Y
-
L
I
R
A
T
-----------
V
--
S
C
G
L
S
L
----------
N
P
S
Q
S
F
-
I
N
---------
G
E
S
L
A
-
S
G
42
SP3
61.47
22%
61
- C7 -
0.28
1RWJ
3
?
A:
[1-81]
--------------------------------------KGMT
P
P
K
T
-
V
----
N
F
K
M
K
--
G
V
-
A
D
--
A
A
F
S
H
-
E
---
F
-------------
H
L
G
M
Y
---
K
C
--
N
E
C
---
H
T
K
L
--
F
A
Y
K
A
G
A
K
R
F
T
-
M
A
D
M
D
K
G
K
--
S
C
G
A
C
H
----------
N
G
K
D
A
F
S
S
A
---------
S
D
C
G
K
-
C
H
22
Fugue
59.86
18%
-12
- C8 -
-
4YGO
-
ATDA_VIBCH
D:
[2-173]
NSQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELE
E
L
Y
N
-
K
----
H
I
H
D
N
--
A
E
-
R
R
--
F
V
V
E
D
A
Q
K--
N
-------------
L
I
G
L
V
---
E
L
--
I
E
I
---
N
Y
-
I
--
H
R
-
S
A
E
F
Q
I
I
I
-
A
P
E
H
Q
G
K
G
----
F
A
R
T
----------
L
I
N
R
A
L
-
D
Y
---------
S
F
T
I
L
-
N
L
40
SP3
57.46
14%
74
* C7 *
0.40
1Y8R
1
SUMO1_HUMAN
C:
[14-97]
--------------------------------------GDKK
E
G
E
Y
-
I
----
K
L
K
V
I
GQ
D
S
-
S
E
--
I
H
F
K
V
K
M
---
T
-------------
T
H
L
K
K
----
L
--
K
E
S
YCQ
R
Q
G
V
--
P
--
M
N
S
L
R
F
L
F
-
E
G
Q
R
I
A
D
N
--
H
T
P
K
E
L
----------
G
M
E
-----
E
---------
E
D
V
I
E
-
V
Y
4
PsiBlast_PDB
56.94
31%
122
- C8 -
-
5GTL
1
?
A:
[336-380]
-------------------------------------------------------------------------------------------------------
E
T
---
E
M
G
P
LV
S
K
-
K
Q
Q
E
R
V
L
N
-
Y
I
E
Q
G
K
K
E
--
G
A
T
V
A
A
----------
G
G
E
R
A
L
-
E
K
---------
G
Y
F
V
K
---
21
Fugue
56.19
18%
-3
- C8 -
-
4MHD
1
ATDA_VIBCH
A:
[26-195]
NSQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELE
E
L
Y
N
-
K
----
H
I
H
D
N
--
A
E
-
R
R
--
F
V
V
E
D
A
Q
K--
N
-------------
L
I
G
L
V
---
E
L
--
I
E
I
---
N
Y
-
I
--
H
R
-
S
A
E
F
Q
I
I
I
-
A
P
E
H
Q
G
K
G
----
F
A
R
T
----------
L
I
N
R
A
L
-
D
Y
---------
S
F
T
I
L
-
N
L
5
PsiBlast_PDB
55.94
31%
115
- C8 -
-
4QET
-
?
A:
[336-380]
-------------------------------------------------------------------------------------------------------
E
T
---
E
M
G
P
LV
S
K
-
K
Q
Q
E
R
V
L
N
-
Y
I
E
Q
G
K
K
E
--
G
A
T
V
A
A
----------
G
G
E
R
A
L
-
E
K
---------
G
Y
F
V
K
---
1
PsiBlast_PDB
55.93
31%
115
- C8 -
-
4QF6
-
?
A:
[336-380]
-------------------------------------------------------------------------------------------------------
E
T
---
E
M
G
P
LV
S
K
-
K
Q
Q
E
R
V
L
N
-
Y
I
E
Q
G
K
K
E
--
G
A
T
V
A
A
----------
G
G
E
R
A
L
-
E
K
---------
G
Y
F
V
K
---
3
PsiBlast_PDB
55.03
31%
115
- C8 -
-
5GTK
1
?
A:
[336-380]
-------------------------------------------------------------------------------------------------------
E
T
---
E
M
G
P
LV
S
K
-
K
Q
Q
E
R
V
L
N
-
Y
I
E
Q
G
K
K
E
--
G
A
T
V
A
A
----------
G
G
E
R
A
L
-
E
K
---------
G
Y
F
V
K
---
2
PsiBlast_PDB
54.03
31%
144
- C8 -
-
5GT6
-
?
A:
[350-394]
-------------------------------------------------------------------------------------------------------
E
T
---
E
M
G
P
LV
S
K
-
K
Q
Q
E
R
V
L
N
-
Y
I
E
Q
G
K
K
E
--
G
A
T
V
A
A
----------
G
G
E
R
A
L
-
E
K
---------
G
Y
F
V
K
---
24
Fugue
53.94
17%
75
- C7 -
0.25
1GH5
-
?
A:
[1-87]
----------------------------------------MI
N
R
T
D
-
C
NENS
Y
L
E
I
H
--
N
N
E
G
R
--
D
T
L
C
F
A
N
---
A
-------------
G
T
M
P
V
---
A
I
YG
V
N
W
---
V
E
S
G
--
N
N
-
V
V
T
L
Q
F
Q
R
-
N
L
S
D
P
R
L
E
--
T
I
T
L
Q
K
----------
W
G
S
W
N
P
-
G
H
---------
I
H
E
I
L
-
S
I
41
SP3
51.97
16%
63
- C7 -
0.20
1QR4
-
TENA_CHICK
A:
[1-87]
-------------------------------------------
D
N
P
-
K
----
D
L
E
V
S
--
D
P
-
T
E
TT
L
S
L
R
W
R
R
---
P
VAKFDRYRLTYVS
P
S
G
K
K
---
N
E
--
M
E
I
------
P
--
V
D
-
S
T
S
F
I
L
R
G
L
D
A
G
T
E
Y
T
I
--
S
L
V
A
E
K
----------
G
R
H
K
S
K
-
P
T
---------
T
I
K
G
S
-
T
V
33
Fugue
50.70
20%
-44
* C8 *
-
1KJK
-
VINT_LAMBD
A:
[11-59]
-------------------------------------------
D
L
P
-
P
----
N
L
Y
I
R
--
N
N
-
G
Y
----
Y
C
Y
R
D
---
P
-------------
R
T
G
K
---------
E
F
---
G
L
G
R
--
D
R
-
R
I
A
I
T
E
A
I
-
Q
A
N
I
E
L
F
S
--
G
H
----------------------------------------
39
SP3
50.16
18%
69
- C- -
-
1TEN
-
?
?:
[803-891]
------------------------------------------
L
D
A
P
-
S
----
Q
I
E
V
K
--
D
V
-
T
D
TT
A
L
I
T
W
F
K
PLA
E
-------------
I
D
G
I
E
---
L
T
--
Y
G
I
---
K
D
V
P
--
G
D
-
R
T
T
I
D
L
T
E
-
D
E
N
Q
Y
S
I
G
--
N
L
K
P
D
T
EYEVSLISRR
G
D
M
S
S
N
-
P
A
---------
K
E
T
F
T
-
T
-
35
SP3
49.39
14%
-80
- C7 -
0.32
1GCY
-
AMT4_PSEST
A:
[358-418]
------------------------------------------------------------
R
-
A
D
--
S
A
I
S
F
H
S
---
G
-------------
Y
S
G
L
V
---
A
T
--
V
S
G
---
S
Q
--------
Q
T
L
V
V
A
L
-
N
S
D
L
G
N
P
G
--
Q
V
A
S
G
S
----------
F
S
E
A
V
N
-
A
S
---------
N
G
Q
V
R
-
V
W
36
SP3
48.80
12%
-
- C7 -
0.26
1EUV
-
SMT3_YEAST
B:
[20-98]
------------------------------------------
P
E
T
H
-
I
----
N
L
K
V
S
D-
G
S
-
S
E
--
I
F
F
K
I
K
K
---
T
-------------
T
P
L
R
R
LME
A
F
--
A
K
----
R
Q
G
K
---
E
-
M
D
S
L
R
F
L
Y
-
D
G
I
R
I
Q
A
D
--
Q
T
P
E
--------------
D
L
D
M
-
E
D
---------
N
D
I
I
E
-
A
H