@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : IR0088_113030T0_kcl40: (2019-03-29 )
LDSLIEHRSPIFCLVQMCEMLDGGKKDCTRWYKVYPGGSHTFQEGGRDTITVTFDNKCKKSLSGSTKKRSIGFPTQVVYRS
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------.......-.-.10----.----------.----------...-...20...-.---.---..-------------------------------.----------30.--....----------...-40---.----------.-.-.-.----..-.50..---..--.---------.------------------.-----.60..-----------------.......70...-.....80
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------L
D
S
L
I
E
H-R-
S
P
I
----
F
----------
C
----------
L
V
Q
-
M
C
E
M
LDGG-
K
---
K
---
D
C
-------------------------------
T
----------
R
W
Y
--
K
VYP----------GGS-H
T
---
F
----------Q-E-G-G----R
D
-
T
I
T
V
T---FD--
N
---------
K
------------------
C
-----
K
K
-SL-----------------SGSTKKRSIGFP-T
Q
V
V
YRS
30
Fugue
69.33
24%
46
* C11 *
-
5ELI
1
TREM2_HUMAN
A:
[4-115]
---------------------------------------------------------------------------NTTV
F
Q
G
V
A
G
Q
-
S
-
L
Q
V
----
S
----------
C
PYDSMKHWGR
R
K
A
-
W
C
R
Q
L
-
G
E
-
K
---
G
---
P
C
-------------------------------
Q
----------
R
V
V
--
S
T
H
N
LWLLSFLRRW
N
G
S
-
T
A
---
I
----------
T
-
D
-
D
-
T
----
L
G
G
T
L
T
I
T
---
L
R
--
N
LQPHDAGLY
Q
------------------
C
-----
Q
--
S
L
-----------------
H
G
S
E
A
D
T
L
R
K
V
L
-
V
E
V
L
A
D
-
23
Fugue
66.04
22%
89
- C9 -
-
5A6W
4
?
C:
[11-93]
------------------------------------------------------------------------------R
A
I
D
L
S
R
E
-
R
-
D
P
N
----
F
FDHPGIPVPE
C
----------
F
W
F
-
M
F
K
--
N
N
V
-
R
---
Q
---
D
A
-------------------------------
G
----------
T
C
Y
--
S
--------------
S
W
-
K
M
---
D
----------
M
-
K
-
V
-
G
----
P
N
-
W
V
H
I
K
---
S
D
--
D
---------
N
------------------
C
-----
N
---
L
-----------------
S
G
D
F
P
P
---
G
W
I
-
V
L
G
K
K
R
P
39
SP3
63.99
25%
16
- C- -
-
1TVD
-
?
A:
[1-116]
--------------------------------------------------------------------------------
D
K
V
T
Q
S
-
S
-
P
D
Q
----
T
----------------------
V
A
------
S
G
S
-
E
---
V
VL-
L
C
-------------------------------
T
YDTVYSNPDL
F
W
Y
--
R
I
R
P
----------
D
Y
S
-
F
Q
---
F
VFYGDDSR--
S
-
E
-
G
-------
G
-
R
F
S
V
K
---
H
I
LT
Q
---------
K
AFHLVISPVRTEDSATYY
C
-----
A
F
-
T
L
-----------------
P
P
P
T
D
K
L
I
F
G
K
G
-
T
R
V
T
V
E
P
31
Fugue
61.87
18%
-18
* C6 *
-
2KL8
-
?
A:
[1-85]
-------------------------------------------------------------------------------
M
E
M
D
I
R
F
-
R
-
G
D
D
-------------------------------
L
E
A
F
E
K
A
-
L
---
K
---
E
M
-------------------------------
I
----------
R
Q
A
--
R
K
F
A
----------
G
T
V
-
T
Y
---
T
----------
L
-
D
-
G
-
N
----
D
L
-
E
I
R
I
T
G--
V
P
--
E
---------
Q
------------------
V
-----
R
K
-
E
L
-----------------
A
K
E
A
E
R
L
A
K
E
F
N
-
I
T
V
T
Y
T
I
38
SP3
53.87
27%
109
- C11 -
-
1BD2
-
TRAC_HUMAN (first)
D:
[1-118]
--------------------------------------------------------------------------------
Q
Q
V
K
Q
N
-
S
-
P
S
L
----
S
----------------------
V
Q
---
E
----
G
-
R
---
I
SIL
N
C
-------------------------------
D
YTNSMFDYF-
L
W
Y
--
K
K
Y
P
----------
A
E
G
-
P
T
---
F
LISISSIKDK
N
-
A
-
D
-
G
----
R
---
F
T
V
F
---
L
N
--
K
---------
S
------------------
A
-----
K
H
L
S
L
HIVPSQPGDSAVYFCAA
M
E
G
A
Q
K
L
V
F
G
Q
G
-
T
R
L
T
I
N
P
32
Fugue
52.22
17%
-68
- C6 -
-
5A6W
-
?
A:
[4-75]
-------------------------------------------------------------------------------------
L
-
K
-
Q
K
I
----
V
----------
I
----------
K
V
A
-
M
E
---
N
N
C
-
R
---
S
---
K
A
-------------------------------
M
----------
A
L
V
--
A
S
T
G
----------
G
V
D
-
S
V
---
A
----------
L
-
V
-
G
D
L
----
R
D
-
K
I
E
V
V
---
G
Y
--
G
---------
I
------------------
D
-----
P
I
-
K
L
-----------------
I
S
A
L
R
K
K
-
V
G
D
A
-
E
L
L
Q
V
S
-
27
Fugue
50.54
18%
46
* C10 *
0.24
1CXY
1
CYB5_ECTSH
A:
[6-86]
-------------------------------------------------------------------------TLPVFT
L
E
Q
V
A
E
H
-
H
-
S
P
---------------------------
D
-
D
-
C
W
M
A
I
H
G
K
-
V
---
Y
---
D
L
-------------------------------
T
----------
P
Y
V
--
P
N
H
P
----------
G
P
A
-
G
M
---
M
----------
L
-
V
-
W
-
C
----
G
Q
-
E
S
T
E
A
---
W
E
--
T
---------
K
------------------
S
-----
Y
G
-
E
P
-----------------
H
S
S
L
A
A
R
L
L
Q
---
R
Y
L
I
G
T
L
40
SP3
49.15
17%
-21
- C4 -
-
1DTO
-
VE2_HPV16
A:
[0-201]
HMETLCQRLNVCQDKILTHYENDSTDLRDHIDYWKHMRLECAIYYKAREMGFKHINHQVVPTLAVSKNKALQAIELQLT
L
E
T
I
Y
---
N
-
S
Q
Y
SNEK
W
----------
T
----------
L
Q
D
V
S
L
E
V
Y
L
T
A
-
P
---
T
---
G
C
IKKHGYTVEVQFDGDNTMHYTNWTHIYICEE
A
----------
S
V
T
--
V
V
E
G
----------
Q
V
D
-
Y
Y
GLY
Y
----------
V
-
H
-
E
-
G
----
I
R
-
T
Y
F
V
Q
---
F
K
--
D
---------
D
------------------
A
-----
E
K
-
Y
-------------------
S
K
N
K
V
W
E
V
H
A
G
-
G
Q
V
I
L
C
P
34
Fugue
49.09
12%
-106
- C6 -
-
4R4E
1
GLNR_BACSU
A:
[1-83]
-------------------------------------------------------------------------------
M
S
D
N
I
R
R
-
S
-
M
P
L
----
F
----------
P
----------
I
G
I
-
V
M
Q
L
T
E
L
S
-
A
---
R
---
Q
I
------------------------------------------
R
Y
Y
--
E
E
N
G
----------
L
I
F
-
P
A
---
R
----------
T
-
E
-
G
-
N
----
R
R
-
L
F
S
F
H
---
D
V
--
D
---------
K
------------------
L
-----
L
E
-
I
K
-----------------
H
L
I
E
Q
G
V
N
M
A
G
I
-
K
Q
I
L
A
K
A
5
HHSearch
48.80
31%
-68
- C10 -
0.09
1ICC
1
CYB5B_RAT
D:
[25-61]
------------------------------------------------------------------------------------------------------------------------------
I
H
G
R
-
V
---
Y
---
D
L
-------------------------------
T
----------
R
F
L
--
S
E
H
P
----------
G
G
E
-
E
V
---
L
----------
R
E
Q
-
A
-
G
----
A
D
--
A
T
E
S
---
F
E
--
D
---------
V
------------------------------------------------------------------
14
HHSearch
46.90
28%
-38
- C10 -
0.19
3X34
1
CYB5_PIG
A:
[30-66]
------------------------------------------------------------------------------------------------------------------------------
L
H
H
K
-
V
---
Y
---
D
L
-------------------------------
T
----------
K
F
L
--
E
E
H
P
----------
G
G
E
-
E
V
---
L
----------
R
E
Q
-
A
-
G
----
G
D
--
A
T
E
N
---
F
E
--
D
---------
V
------------------------------------------------------------------
15
HHSearch
46.40
20%
-165
- C10 -
0.21
1CXY
1
CYB5_ECTSH
A:
[28-63]
------------------------------------------------------------------------------------------------------------------------------
I
H
G
K
-
V
---
Y
---
D
L
-------------------------------
T
----------
P
Y
V
--
P
N
H
P
----------
G
P
A
-
G
M
---
M
----------
L
-
V
W
C
-
G
----
Q
E
--
S
T
E
A
---
W
E
--
T
----------------------------------------------------------------------------
22
Fugue
46.39
16%
-6
- C9 -
-
2MYW
-
?
A:
[7-85]
------------------------------------------------------------------------------S
G
R
E
N
L
Y
F
-
Q
-
G
H
M
----
A
----------
A
----------
P
A
R
-
F
C
V
Y
Y
D
G
H
L
P
---
A
---
T
R
-------------------------------
V
----------
L
L
M
--
Y
V
R
I
----------
G
T
T
-
A
T
---
I
----------
T
-
A
-
R
-
G
----
H
E
-
F
E
V
E
A
---
K
D
--
Q
---------
N
------------------
C
-----
K
V
-
I
L
-----------------
T
N
G
--
K
Q
A
P
D
W
L
-
A
A
E
P
Y
--
7
HHSearch
45.94
28%
-61
- C10 -
0.10
1LR6
1
CYB5_BOVIN
A:
[22-58]
-----------------------------------------------------------------------------------------------------------------------------
I
L
H
Y
K
-
V
---
Y
---
D
L
-------------------------------
T
----------
K
F
L
--
E
E
H
P
----------
G
G
E
-
E
Y
---
L
----------
R
E
Q
-
A
-
G
----
G
D
--
A
T
E
N
---
F
E
--
D
----------------------------------------------------------------------------
29
Fugue
45.39
13%
-88
- C6 -
-
1TH5
-
NIFU1_ORYSJ
A:
[153-226]
-------------------------------------------------------------------------------
M
L
E
L
N
E
E
-
N
-
V
E
K
----
V
----------
L
---------------------------
N
---
E
I
-------------------------------
R
----------
P
Y
L
--
A
G
T
G
----------
G
G
G
-
L
Q
---
F
----------
L
-
M
-
I
-
K
----
G
P
-
I
V
K
V
R
---
L
T
--
G
---------
P
------------------
A
AVVRT
V
R
-
I
A
-----------------
V
S
K
K
L
R
E
K
I
P
S
I
-
Q
I
V
Q
L
L
S
37
Fugue
44.90
19%
49
* C5 *
-
2L3N
-
A:
[1-104]
--------------------------------------------------------------SVSILRSSVNHREVDEA
I
D
N
I
L
R
Y
-
T
N
S
T
E
----
Q
----------
Q
----------
F
L
E
-
A
M
E
S
T
G
G
R
-
V
---
R
---
I
A
-------------------------------
I
----------
A
K
L
LS
K
Q
T
S
----------
G
G
S
-
G
G
---
S
----------
K
-
L
-
G
-
G
SGGS
R
K
-
D
L
S
V
K
GML
Y
D
--
S
---------
D
------------------
S
-----
Q
Q
-
I
L
-----------------
N
R
L
R
E
R
V
S
G
S
T
A
-
Q
S
A
----
9
HHSearch
44.02
26%
-50
- C10 -
0.19
3LF5
1
NB5R4_HUMAN
B:
[26-61]
------------------------------------------------------------------------------------------------------------------------------
I
R
G
F
-
V
---
Y
---
N
V
-------------------------------
S
----------
P
Y
M
--
E
Y
H
P
----------
G
G
E
-
D
E
---
L
----------
M
-
R
A
A
-
G
----
S
D
--
G
T
E
L
---
F
D
--
Q
----------------------------------------------------------------------------
13
HHSearch
42.98
29%
-62
- C10 -
0.08
3OZZ
1
CYB5_BOVIN
B:
[23-58]
------------------------------------------------------------------------------------------------------------------------------
I
H
Y
K
-
V
---
Y
---
D
I
-------------------------------
T
----------
R
F
L
--
S
E
H
P
----------
G
G
E
-
E
V
---
L
----------
L
E
Q
-
A
-
G
----
A
D
--
A
T
E
S
---
F
E
--
D
----------------------------------------------------------------------------
26
Fugue
41.85
19%
16
- C6 -
-
4RS7
-
?
A:
[375-461]
-----------------------------------------------------------------------------AD
L
E
S
L
Y
R
A
M
P
--------------------------------
S
-
I
K
K
L
V
D
E
G
-
K
LTE
K
---
D
A
-------------------------------
E
----------
K
V
Y
--
E
I
W
R
----------
N
--M
E
A
---
I
----------
Y
-
K
-
Q
-
A
----
S
L
-
L
W
Y
N
T
---
V
D
--
L
---------
L
------------------
L
-----
K
R
-
I
G
-----------------
L
S
E
K
E
R
E
E
I
F
Y
E
M
V
R
P
Y
F
R
L
21
HHSearch
41.53
26%
-33
- C10 -
0.17
1U9M
1
CYB5_BOVIN
B:
[23-58]
------------------------------------------------------------------------------------------------------------------------------
L
H
Y
K
-
V
---
Y
---
D
L
-------------------------------
T
----------
K
F
L
--
E
E
H
P
----------
G
G
E
-
E
V
---
L
----------
R
E
Q
-
A
-
G
----
G
D
--
A
T
E
N
---
W
E
--
D
----------------------------------------------------------------------------