@TOME V3
(Feb 2022)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : P28_094280T0_kcl17: (2019-03-29 )
IFKKPVPTSCKLALTNGNKREVDAKLLPPSGTTILSDTSGAGIFTAKVNSKCEFTSVSPALPTGFNIEGSV
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.--....-...20---.....--..-----.--30--------.....----.-------..40.---.....------.--.--------50--------.------....--.-..----.--------60.----.-------.-----.-...--..70------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IFKKPVPTS
C
K
L
--
A
LTN-GNKRE---VD
A
K
L--LP-----P--SG--------
T
T
I
L
S----D-------TSG
A
G
---
I
F
T
A
K------V--N--------S---------K------CEFT--S-VS----P--------A-L----P-------T-----G-FNI--EGSV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
81.90
14%
-83
- C3 -
0.61
2MM2
-
?
A:
[1-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
A
--
N
I
L
N
-
I
N
E
V
V
---
I
A
T
G
C
--
V
P
-----
A
--
G
G
--------
N
L
I
I
R
----
V
-------
G
S
D
-
H
---
S
Y
L
I
R
------
A
--
T
--------
V
---------
S
------
C
G
L
S
--
L
-
N
P
----
S
--------
Q
S
F
----
I
-------
N
-----
G
-
E
S
L
--
A
S
G
G
R
C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
70.72
25%
1
- C3 -
0.41
5DHD
6
?
A:
[3-100]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
K
P
G
S
L
S
V
K
V
--
T
D
W
G
-
N
T
E
Y
D
---
V
T
L
N
L
--
G
G
-----
T
--
Y
D
--------
W
V
V
K
V
----
K
L
K
DGSSV
S
S
F
W
S
---
A
N
K
A
E
------
E
--
G
--------
G
---------
Y
------
V
V
F
T
--
P
-
V
S
WNRG
P
--------
T
-
A
----
T
-------
F
-----
G
-
F
I
A
--
T
G
S
E
SVE
A
I
Y
L
Y
V
DGQLWDAW-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
70.58
17%
-102
- C3 -
0.50
2MM0
-
?
A:
[1-58]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
V
A
--
N
I
L
N
-
I
N
E
A
V
---
I
A
T
G
C
--
V
P
-----
A
--
G
G
--------
E
L
R
I
F
----
V
-------
G
S
S
H
----
S
Y
L
I
K
------
A
--
T
--------
S
---------
S
------
C
G
L
S
--
L
-
T
N
----
Q
--------
V
-
F
----
I
-------
N
-----
G
-
E
S
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
64.50
15%
74
- C3 -
-
2AAK
-
?
?:
[1-150]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MST
P
A
R
K
R
L
M
R
D
F
K
R
L
Q
Q
D
P
P
A
G
I
S
G
--
A
P
Q
D
-
N
N
I
M
L
---
W
N
A
V
I
--
F
G
-----
P
--
D
D
--------
T
----------------
P
W
D
G
G
---
T
F
K
L
S
------
L
--
Q
--------
F
---------
S
------
E
D
Y
P
--
N
-
K
P
----
P
--------
T
-
V
----
R
FV
S
R
M
F
H
P
-----
N
-
I
Y
A
--
D
G
S
I
CLDILQNQWSPIYD
V
A
A
I
L
T
S
I
Q
S
L
L
C
D
PNPNSPAN
S
E
A
A
R
M
Y
S
E
S
K
R
E
Y
N
R
R
V
R
D
V
V
E
Q
S
W
T---------------------------------------------------------------------------------------------------------------------------
31
Fugue
64.01
17%
-31
- C3 -
0.48
3E5Z
-
?
A:
[2-291]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TLRAARPE
F
L
D
L
F
PAG
A
E
A
R
R
LADGFTWT
E
G
P
V
Y
V
PARS
A
V
I
F
S
DVRQN
R
T
W
A
W
S
DDG
Q
L
S
P
E
M
HPSHHQ
N
G
H
C
L
N
KQG
H
L
I
A
C
S
HGLR
R
L
E
R
Q
REPG
G
E
W
E
S
IADSFEGKKLNSPN
D
V
C
L
A
PDG
S
L
W
F
S
D
P
T
Y
G
I
D
K
P
EEGY
G
G
E
M
ELP
G
R
W
V
F
R
L
A
--
P
D
G
T
L
--
S
A
P
I
-
R
D
R
V
K
---
P
N
G
L
A
--
F
L
-----
P
--
S
G
--------
N
L
L
V
S
----
D
-------
T
G
D
N
A
---
T
H
R
Y
C
L
NARG
E
T
--
E
--------
Y
---------
Q
------
G
V
H
F
--
T
-
V
E
----
P
--------
G
-
K
----
T
-------
D
-----
G
-
L
R
V
D
A
G
G
L
I
W
A
S
A
GD
G
V
H
V
L
T
PDGDELGRVLTPQTTS
N
L
C
F
G
G
PEGR
T
L
Y
M
TVST
E
F
W
S
I
E
T
NVRGLEH------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
61.88
51%
-54
* C5 *
-
5JDS
-
?
B:
[44-75]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
E
R
E
---
R
V
A
K
L
--
L
T
-----
T
--
S
G
--------
S
T
Y
L
A
----
D
--------
S
V
K
G
---
R
F
T
I
S
------
Q
--
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
SP3
61.80
23%
33
- C3 -
0.15
1C0P
2
OXDA_RHOTO
A:
[196-290]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
P
I
R
G
Q
T
V
L
V
K
S
P
C
K
---
R
C
--
T
M
D
S
-
S
D
P
A
S
----
P
A
Y
I
--
I
P
R
----
P
--
G
G
--------
E
V
I
C
G
----
G
-------
T
Y
G
V
G
---
D
W
D
L
S
------
V
--
N
P
E
T
V
Q
R
I
L
K
---------
H
------
C
L
----
R
-
L
D
----
P
--------
T
-
I
----
S
-------
S
-----
D
-
G
T
I
--
E
G
I
E
VL
R
H
N
V
G
L
R
PAR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
61.07
18%
44
- C3 -
0.40
5A6W
4
?
C:
[11-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RAIDLSRERDPNFFD
H
P
G
I
P
V
P
E
C
F
W
F
--
M
F
K
N
-
N
V
R
Q
D
---
A
G
T
C
Y
------------
S
S
--------
W
K
M
D
M
----
K
-------
V
-
G
P
N
---
W
V
H
I
K
------
S
--
D
--------
D
---------
N
------
C
N
------
L
S
----
G
--------
D
-
F
----
P
-------
P
-----
G
-
W
I
V
--
L
G
K
K
R
PGF--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
SP3
60.36
19%
61
- C3 -
-
2UCZ
-
?
?:
[2-165]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
K
T
A
Q
K
R
L
L
K
E
L
Q
Q
L
I
K
D
S
P
P
G
I
V
A
G
--
P
K
S
E
-
N
N
I
F
I
---
W
D
C
L
I
--
Q
G
-----
P
--
P
D
--------
T
----------------
P
Y
A
D
G
---
V
F
N
A
K
------
L
--
E
--------
F
---------
P
------
K
D
Y
P
--
L
-
S
P
----
P
--------
K
-
L
T
F--
T
-------
P
SILHP
N
-
I
Y
P
--
N
G
E
V
C
I
SILHSPGDDPNMYELAEERWSPVQS
V
E
K
I
L
L
S
V
M
S
M
L
S
E
PNIESGAN
I
D
A
C
I
L
W
R
DN
R
P
E
F
E
R
Q
V
K
L
S
I
L
K
S
L
GF-------------------------------------------------------------------------------------------------------------
33
Fugue
56.22
22%
-26
- C1 -
-
1G9M
13
?
G:
[5-321]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKL
T
P
L
C
V
G
A
G
S
C
N
T
--
S
V
I
T
-
Q
A
C
P
K
---
V
S
F
E
P
--
I
P
IHYCA
P
--
A
G
--------
F
A
I
L
K
CNNK
T
-------
F
N
G
T
G
---
P
C
T
N
V
------
S
--
T
--------
V
---------
Q
------
C
T
H
---
G
-
I
R
----
P
--------
V
-
V
----
S
-------
T
-----
Q
-
L
L
L
--
N
G
S
L
AEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTGAGHCNISRAKWNNTLKQIASKLREQFGNNKTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSNNESEIFRPGGGDMRDNWRSELYKYKVVKIE
40
SP3
55.44
21%
35
- C3 -
0.33
1GUQ
1
GAL7_ECOLI
A:
[178-348]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
E
R
E
D
R
L
Q
K
E
Y
F
A
E
QKSP
M
L
V
D
Y
V
Q
R
E
L
A
D
GSRTVVETEH
W
L
A
V
VPYWAAWPF
E
T
L
L
L
P
KAHVLRITDLT
D
A
Q
R
S
D
L
A
L
A
L
K
K
L
T
S
R
Y
D
N
L
F
Q
C
S
F
P
Y
S
M
G
W
H
G
A
P
F
N
-
G
E
E
N
Q
H
W
Q
L
H
A
H
F
--
Y
P
-----
P
---------------
L
L
----
R
-------
S
A
T
V
R
---
K
F
M
V
G
------
Y
--
E
--------
M
---------
L
------
A
E
T
Q
--
R
D
L
T
----
A
E
Q
A
A
E
R
L
R
A
-
V
----
S
-------
D
-----
I
-
H
F
R
--
E
S
G
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
55.39
21%
-32
- C4 -
-
2MPN
-
YGAP_ECOLI
A:
[106-173]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
Q
P
L
P
L
M
R
Q
V
--
Q
I
A
A
-
G
G
L
I
L
---
I
G
V
V
L
G
Y
T
V
-----
N
--
S
G
--------
F
F
L
L
S
----
G
-------
F
V
G
A
G
---
L
L
F
A
G
------
I
--
S
--------
G
---------
F
------
S
G
M
A
--
R
-
L
L
----
D
--------
K
-
M
----
P
---------------
W
N
Q
--
R
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
54.55
20%
43
- C4 -
-
4ZKD
1
SKI7_YEAST
A:
[7-499]
---------------------------------------------------------------------------------------------------------ID
I
H
S
F
I
A
T
H
P
L
N
L
T
C
L
F
L
G
D
T
NAG
K
S
T
L
L
G
H
L
L
Y
D
L
NEIS
M
S
S
M
R
E
L
Q
K
K
S
S
NLDPSSSN
S
F
K
V
I
L
D
NT
K
T
E
R
E
N
GFSM
F
K
K
V
I
Q
V
E
NDLLPPS
S
T
L
T
L
I
D
T
P
GS
I
K
Y
F
N
K
E
T
L
N
S
I
L
T
FDPE
V
Y
V
L
V
I
D
CNYD
S
W
E
K
S
L
DGPNN
Q
I
Y
E
I
L
K
V
ISYLNKNSA
C
K
K
H
L
I
I
L
LNKADLISWD
K
H
R
L
E
M
I
Q
S
E
L
N
Y
V
L
K
ENFQWTDAE
F
Q
F
I
P
C
S
GLLGSNLNKINYVPE
W
Y
E
G
P
T
F
F
S
Q
L
Y
--
L
L
V
E
-
H
N
M
N
K
---
I
E
T
T
L
--
E
E
-----
P
--
F
V
--------
G
T
I
L
Q
----
S
-------
S
V
L
Q
P
---
I
----------------------
A
---------
E
------
I
N
Y
V
--
S
-
L
K
----
V
--------
L
-
I
----
N
-------
S
-----
G
-
Y
I
Q
--
S
G
Q
T
I
E
I
H
T
QYEDF
H
Y
Y
G
I
V
S
R
M
K
N
S
KQILETNTKNNISVGLNP
D
I
L
E
V
L
V
K
I
H
N
TEDFTKKQFHIRKG
D
I
I
I
H
S
RKTN
T
L
K
L
L
A
L
R
L
I
K
L
S
I
Q
T
H
ALS
D
P
V
D
L
G
S
E
L
L
L
Y
H
NL
T
H
N
A
V
K
LVKILGTNDI
S
I
N
P
NQS
L
I
V
E
V
E
I
IEPD
F
A
L
N
V
I
D
S
KYITN
N
I
V
L
T
S
IDHKVI
A
V
G
R
I
ACQ---------
36
SP3
54.32
12%
36
- C3 -
0.26
1JAT
-
UBC13_YEAST
A:
[1-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AASLP
K
R
I
I
K
E
T
E
K
L
V
S
D
P
V
P
G
I
T
A
--
E
P
H
D
-
D
N
L
R
Y
---
F
Q
V
T
I
--
E
G
-----
P
--
E
Q
--------
S
----------------
P
Y
E
D
G
---
I
F
E
L
E
------
L
--
Y
--------
L
---------
P
------
D
D
Y
P
--
M
-
E
A
----
P
K
V
------
R
-
F
----
L
-------
T
K
I
Y
H
P
N
-
I
D
R
--
L
G
R
I
CLDVLKTNWSPALQ
I
R
T
V
L
L
S
I
Q
A
L
L
A
S
PNPNDPLANDV
A
E
D
W
I
K
N
E
Q
G
A
K
A
K
A
R
E
W
T
K
L
YAKKKP------------------------------------------------------------------------------------------------------------------------
39
SP3
53.16
16%
62
- C3 -
1YH2
-
UBE2T_HUMAN
A:
[-1-154]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
M
Q
R
A
S
R
L
K
R
E
L
H
M
L
A
T
E
P
P
P
G
I
T
C
--
W
Q
D
K
-
D
Q
M
D
D
---
L
R
A
Q
I
--
L
G
-----
G
--
A
N
--------
T
--------
P
-------
Y
E
K
-
G
---
V
F
K
L
E
------
V
--
I
--------
I
---------
P
------
E
R
Y
P
--
F
-
E
P
----
P
--------
Q
-
I
R
F
LT
P
-------
I
-----
Y
H
P
N
I
DS
A
G
R
I
C
L
DVLKLPPKGAWRPSLN
I
A
T
V
L
T
S
I
Q
L
L
M
S
E
PNPDDPLM
A
D
I
S
S
E
F
K
YN
K
P
A
F
L
K
N
A
R
Q
W
T
E
K
HARQK---------------------------------------------------------------------------------------------------------------------
25
Fugue
52.87
20%
18
- C3 -
0.29
5D4N
2
?
A:
[3-107]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
K
L
Y
P
L
K
K
L
E
I
--
I
L
E
G
-
A
H
K
E
F
---
A
T
D
L
L
--
D
R
-----
A
GV
K
G
--------
Y
T
I
V
G
----
N
-------
L
S
G
K
G
SH
G
M
Y
E
G
H
------
L
MF
N
--------
E
---------
D
------
D
A
L
I
--
M
-
I
I
----
A
--------
A
-
V
----
P
---------------
E
E
L
--
V
G
P
L
L
E
G
F
Q
P
F
F
E
A
H
S
G
V
V
F
V
H
D
I
Q
V
GRPIKFR-------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
52.82
41%
-67
* C7 *
-
3W5F
-
?
A:
[377-415]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
-----
P
--
W
S
--------
I
S
I
L
P
----
D
-------
C
K
T
A
V
---
Y
N
T
A
Q
------
V
--
N
--------
S
---------
Q
------
S
S
S
I
--
K
-
M
T
----
P
--------
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
51.88
41%
-62
- C7 -
-
3W5G
1
?
A:
[377-410]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
-----
P
--
W
S
--------
I
S
I
L
P
----
D
-------
C
K
T
A
V
---
Y
N
T
A
Q
------
V
--
N
--------
S
---------
Q
------
S
S
S
I
--
K
-
M
T
----
P
--------
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
48.24
20%
-
- C3 -
0.25
4KNC
-
ALGX_PSEAE
A:
[41-463]
GNLCPAAAYDSRYNTKYLGFFTHLVQAQDDWLFRTTYDLRTDFGTSAEGWRELRALRDELKRKGIELVVVYQPTRGLVNREKLSPAEKAGFDYELAKKNYLATIARFRQAGIWTPDFSPLFDEKEEHAYYFKGDHHWTPHGARRSAKIVAETLKQVPGFEEIPKKQFESKRVGLLSKLGTFHKAAAQLCGNSYATQYVDRFETEPVGNPQIALVGTSNSGPAYNFAGFLEEFSGADILNNAVSGGGFDSSLLAYMTSEEFHKNPPKILIWEFATHYDMAQKSFYRQAMPLVDNGCSGRKTVLSRKVKLRQGRNEVLLNSAALPIRSGSYVADV
T
Y
S
D
P
S
V
H
E
L
K
N
--
T
I
W
Y
-
M
N
G
R
R
---
E
Q
L
K
I
--
E
Q
-----
S
--
K
A
--------
V
--------
D
-------
T
G
G
R
Y
---
V
F
Q
L
R
------
N
--
D
--------
S
---------
D
WADQQF
L
S
L
E
--
I
-
E
A
----
P
--------
D
-
M
----
P
-------
Q
-----
G
-
L
E
V
--
Q
A
S
I
CQAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
46.64
14%
77
- C3 -
0.36
3BOV
1
PD1L2_MOUSE
A:
[2-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L
F
T
V
T
A
PKE
V
Y
T
V
D
V
G
S
S
V
S
L
E
C
D
F
--
D
R
R
E
C
T
E
L
E
G
---
I
R
A
S
L
--
Q
K
-----
V
--
E
N
DTSLQSER
A
T
L
L
E
----
E
-------
Q
L
P
L
G
---
K
A
L
F
H
------
I
--
P
--------
S
VQVRD
S
G
Q
Y
R
------
C
L
V
I
C
G
A
-
A
W
----
D
--------
Y
-
K
----
Y
-------
L
-----
T
-
V
K
V
--
K
A
S
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------