@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Pm1_031950T0_kcl29: (2019-03-29 )
AKCLVQLKNAQDTVVSSFEALAGVRKVVQAKGFKWMCKTAIEDCHPYGCIIPKGLTPVGTV
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........-----.10.-...------.---...20-.-....---....30-...--..-..---.--.40.........50....-....60--------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
K
C
L
V
Q
LK-----NA
Q
D
-
T
V
V
------
S
---
S
F
E
A
--
L
-
A
G
V
R
---
K
V
V
Q
A--KG
F
--
K
W
-
M
C
---
K
--
T
A
-
I
EDCHPY
G
C
IIPKGL-TPVGTV--------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
61.43
23%
-8
- C5 -
0.38
1NBW
-
?
A:
[2-607]
P
L
I
A
G
I
D
IGNA
T
T
E
V
A
L
A
S
D
Y
P
Q
A
R
A
F
V
A
S
G
I
V
ATTGMKGTRDN
I
A
G
T
L
A
A
L
E
Q
A
L
A
K
T
PWSMSDVS
R
I
Y
L
N
E
A
A
P
V
I
G
D
V
A
M
E
T
I
T
E
T
I
I
T
ESTMIGHNPQTP
G
G
V
G
V
G
V
G
T
T
I
A
LGRLATLPAAQYAE
G
W
I
V
L
I
D
DAVD
F
L
D
A
V
W
W
L
N
E
A
L
D
R
GINVV
A
A
I
L
KKDD
G
V
L
V
N
N
R
LRKT
L
P
V
V
D
EVTLLEQVPEG
V
M
A
A
V
E
V
A
A
PGQVVRILSN
P
Y
G
I
A
T
F
F
GLS
P
E
E
T
Q
A
I
V
P
I
A
R
A
L
IGNR
S
A
V
V
L
KTPQ
G
D
V
Q
S
R
V
I
PA
G
N
L
Y
I
S
G
EK
R
R
G
E
A
DVAEG
A
E
A
I
M
Q
A
M
S
A
C
APVR
D
I
R
G
E
P
GT
H
A
G
G
M
L
E
R
V
R
K
V
M
A
S
L
T
GHEMSAIYIQ
D
L
L
A
V
D
T
F
I
P
R
K
VQGGMAG
E
C
A
M
E
N
A
V
G
M
A
A
M
V
K
ADRLQMQV
I
A
R
E
L
S
A
R
L
Q
T
E
V
V
V
G
G
V
E
A
N
M
A
I
A
G
A
L
T
TPGCAAP
L
A
I
L
D
LGAG
S
T
D
A
A
I
V
N
AEG
Q
I
T
A
V
H
L
A
G
A
G
N
M
V
S
L
L
I
K
T
E
L
GLED
L
S
L
A
E
A
I
K
K
Y
P
L
A
K
VESLF
S
I
R
H
ENG
A
V
E
F
F
REALSPAV
F
A
K
V
V
Y
I
K
-----
E
G
E
L
-
V
P
I
------
D
NAS
P
L
E
K
--
I
-
R
L
V
R
---
R
Q
A
K
E
--
K
V
F
--
V
T
-
N
C
---
L
--
R
A
-
L
R
Q
V
S
P
G
G
S
I
------
R
D
I
A
F
V
V
L
V
G
GSSLDFE
I
P
Q
L
I
T
E
A
L
S
H
Y
GVVA
G
Q
G
N
I
RGTEGPRN
A
V
A
T
G
L
L
L
A
G
Q
A
N---------------------------------------------------------------------------------------------------------
36
Fugue
60.47
24%
64
- C5 -
0.44
3MGB
1
?
B:
[35-319]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
N
G
I
R
W
IASYPKAG
N
T
W
V
R
C
M
L
A
A
Y
I
T
GKAPQV
W
N
D
I
D
A
E
SLT
L
E
A
M
L
R
F
GDLPPAEPM
E
P
V
L
V
K
T
HLKADV
P
V
L
G
L
Y
G
EAT
A
K
V
L
Y
L
V
R
-----
N
P
R
D
-
M
L
L
------
S
---
S
M
R
M
--
A
-
S
I
S
R
---
D
--
D
V
--
E
K
S
--
R
D
-
F
A
---
R
--
K
F
-
I
A
N
---------
E
G
L
-
G
W
N
G
V
G
LGS
W
P
E
N
V
R
S
W
T
E
SSSDRFPN
A
D
V
L
T
M
R
Y
E
D
L
K
G
D
P
V
A
R
F
S
E
I
V
E
F
L
DLGGPVD
I
E
D
I
R
R
A
V
A
A
S
T
L
E
R
M
R
E
L
E
K
R
S
E
Q
Q
GGGSPIRPQFVGEGRYDQSLSFLG
E
D
I
E
S
D
Y
Q
E
L
L
H
GDS
G
F
A
L
Y
A
K
Q
Y
GYAG--------------------------
1
PsiBlast_PDB
59.30
31%
-83
- C4 -
-
1CHU
-
NADB_ECOLI
A:
[156-208]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
E
R
T
-----
N
A
V
D
-
L
I
V
------
S
---
D
K
I
G
--
L
-
P
G
T
R
---
R
V
V
G
A
--------
W
-
V
W
N
RN
K
--
E
T
-
V
E
T
C
H
A
K
A
V
V
L
A
T
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
58.82
23%
94
- C5 -
0.34
1U6T
1
SH3L1_HUMAN
A:
[1-121]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------V
I
R
V
Y
I
A
S
S
S
G
S
T
A
I
K
-----
K
K
Q
Q
-
D
V
L
------
G
---
F
L
E
A
N
K
I
-
G
F
E
E
---
K
D
I
A
A
N
E
E
N
R
--
K
W
-
M
R
---
E
--
N
V
-
P
E
N
S
R
P
-----
A
T
G
Y
-
P
L
P
P
Q
I
FNESQYRGD
Y
D
A
F
F
E
A
R
E
N
NA
V
Y
A
F
L
GLTAPPGS
K
E
A
E
V
Q
A
K
Q
Q
A
L
E
H
H
H
H
HH---------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
58.02
31%
-83
- C4 -
-
1KNP
1
NADB_ECOLI
A:
[156-205]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
E
R
T
-----
N
A
V
D
-
L
I
V
------
S
---
D
K
I
G
--
L
-
P
G
T
R
---
R
V
V
G
A
--------
W
-
V
W
NRN
K
--
E
T
-
V
E
T
C
H
A
K
A
V
V
L
A
T
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
55.34
31%
-76
- C4 -
-
1KNR
1
NADB_ECOLI
A:
[156-205]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
E
R
T
-----
N
A
V
D
-
L
I
V
------
S
---
D
K
I
G
--
L
-
P
G
T
R
---
R
V
V
G
A
--------
W
-
V
W
NRN
K
--
E
T
-
V
E
T
C
H
A
K
A
V
V
L
A
T
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
45
SP3
52.87
21%
-22
- C4 -
-
1ICF
1
HG2A_HUMAN
I:
[1-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L
T
K
C
Q
E
E
V
S
-----
H
I
P
A
-
V
H
P
------
G
---
S
F
---------
R
---
P
K
C
D
E
--
N
G
N
YL
P
L
-
Q
C
---
Y
--
G
S
-
I
G
Y
C
W
---
C
V
F
P
N
G
T
-
E
V
P
N
T
R
SRGHHNCSES----------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
52.69
22%
28
- C5 -
5IP1
-
?
A:
[23-267]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKVKLT
K
E
N
I
V
A
L
L
T
QG
K
D
L
E
F
E
E
NQNLVAFN
F
K
T
F
C
L
E
N
L
D
-----
Q
I
K
K
M
S
I
I
------
S
---
C
L
T
F
--
L
-
K
N
R
Q
S
I
M
K
V
I
K
Q
--
S
D
F
--
T
F
------------------
G
K
I
T
I
K
K
T
S
-
D
R
I
G
A
T
DMT
F
R
R
L
D
S
L
I
R
V
R
L
V
E
E
TGN
S
E
N
L
N
T
I
K
S
K
I
A
SH
P
L
I
Q
A
Y
GLPLDD
A
K
S
V
R
L
A
I
M
LGGS
L
P
L
I
A
S
VDSF
E
M
I
S
V
V
L
A
I
Y
Q
D
A
K
YKDLGIDPKKYD
T
K
E
A
L
G
K
V
C
T
V
L
K
S
K
AFEMN
E
D
Q
V
K
K
G
K
E
Y
A
A
I
L
S
S
S
N
P
N
AKGS
V
A
M
E
H
Y
S
E
T
L
N
K
F
Y
E
M
F
G
40
SP3
51.28
14%
15
* C4 *
-
1D1L
-
RCRO_LAMBD
A:
[1-61]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
Q
R
I
T
L
K
D
Y
A
M
R
F
G
Q
T
-
K
T
A
------
K
---
D
L
G
V
--
Y
Q
S
A
I
N
---
K
A
I
H
A
---
G
R
--
K
I
-
F
L
---
T
--
I
------
N
A
D
G
S
V
Y
A
E
E
V
-
K
P
W
P
S
N
--------------------------------------------------------------------------------------------------------------------------------------------------------------
42
SP3
50.32
22%
-3
- C5 -
0.28
1C1Y
-
RAF1_HUMAN
B:
[1-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
N
T
I
R
V
F
L
P
-----
N
K
Q
R
-
T
V
V
N
V
R
NGM
S
---
L
H
D
C
--
L
----
M
---
K
A
L
K
V
--
R
G
L
--
Q
P
E
C
C
---
A
--
V
F
-
R
L
L
H
E
H
K
G
K
K
A
R
L
D
W
N
T
D
A
A
S
L
IG
E
E
L
Q
V
D
F
L----------------------------------------------------------------------------------------------------------------------------------------------------
44
SP3
48.39
16%
-70
* C5 *
0.42
1BAZ
-
RARC_BPP22
A:
[5-53]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
-----
M
P
Q
V
-
N
L
R
------
W
---
P
R
E
V
--
L
-
D
L
V
R
---
K
V
A
E
E
--
N
G
R
--
S
V
-
N
S
---
E
--
I
Y
-
Q
R
V
M
E
S
F
K
---
K
E
G
R
-
I
G
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
46.09
12%
-66
- C5 -
0.22
1N87
-
PRP19_YEAST
A:
[1-56]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
C
A
I
S
G
K
-----
V
P
R
R
-
P
V
L
------
S
---
P
K
S
--------
R
---
T
I
F
E
K
--
S
L
L
--
E
Q
-
Y
V
---
K
--
D
T
-
G
N
D
P
I
T
N
E
P
L
S
I
E
E
I
-
V
E
I
V
P
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
46.01
13%
2
- C5 -
0.46
5J5L
1
?
A:
[1-152]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MD
A
A
T
I
L
S
D
L
S
T
I
K
T
D
I
N
T
L
T
Q
H
F
N
E
FTGD
L
L
Q
A
L
A
A
Q
A
V
E
Q
Q
L
E
S
D
I
D
Q
A
T
A
D
A
K
A
TSALS
A
A
D
S
T
S
V
T
N
A
L
L
-----
G
L
K
P
-
D
I
V
------
T
---
S
L
D
A
--
I
-
V
A
K
K
---
P
Q
V
D
S
--
A
G
V
--
G
S
-
L
V
---
L
--
S
D
-
L
N
A
L
Q
S
K
T
D
A
L
S
G
A
L
-
Q
D
I
A
T
A
T
D
K
D
T
I
A
S
G
T
Q
D
I
D
A
A
F
S
S
A
I
A
V
F
S-------------------------------------------------------------------------------------------------------------------------------------
47
SP3
45.75
13%
-73
- C5 -
0.30
1H8B
-
A:
[3-75]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
D
T
-----
D
T
A
E
-
Q
V
I
------
A
---
S
F
R
I
--
L
-
A
S
D
K
---
P
Y
I
L
A
--
E
E
L
--
R
R
-
E
L
---
P
--
P
D
Q
A
Q
Y
C
I
K
R
M
P
A
Y
S
G
P
G
-
S
V
P
G
A
L
D
Y
A
A
F
S
S
A
L
Y
G
ESDL-----------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
45.58
20%
-80
- C5 -
0.45
1EA4
-
COPG_STRAG
A:
[2-43]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
R
L
-
T
I
T
------
L
---
S
E
S
V
--
L
-
E
N
L
E
---
K
M
A
R
E
--
M
G
L
S
K
S
A
-
M
I
---
S
--
V
A
-
L
E
N
Y
K
K
G
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
SP3
44.93
14%
-62
- C5 -
-
1GPS
-
?
?:
[1-47]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
C
R
R
R
S
A
-----
G
F
K
G
-
P
C
M
------
S
---------
N
-
K
N
C
A
---
Q
V
C
Q
Q
--
E
G
W
G-
G
G
-
N
C
---
D
--
G
P
-
F
R
R
C
K
---
C
I
R
Q
C
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
SP3
43.15
9%
-162
- C5 -
0.36
1QME
-
PBPX_STRPN
A:
[645-702]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
V
P
D
M
Y
-----
G
W
T
K
-
E
T
A
------
E
---
T
L
A
K
--
W
-
L
N
I
E
---
L
E
F
Q
G
--
S
G
S
--
T
V
-
Q
K
---
Q
--
D
V
------
R
A
N
T
A
I
-
K
D
I
-
K
K
I
-
T
L
T
L
G
D----------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
42.10
45%
-131
- C6 -
-
1UOY
-
BUBL_PENBR
A:
[34-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
V
E
C
--
K
G
G
--
K
W
---------
T
E
-
V
Q
D
C
G
S
S
S
C
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
48
SP3
41.57
11%
-52
- C5 -
0.32
1ILO
-
THIRX_METTH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
M
K
I
Q
-----
I
Y
G
T
-
G
C
A
------
N
---
C
Q
M
L
--
E
-
K
N
A
R
---
E
A
V
K
E
--
L
G
I
--
D
A
-
E
F
---
E
K
I
K
E
-
M
D
Q
I
L
E
A
G
L
T
A
L
P
G
L
-
A
V
D
G
E
L
KIMG
R
V
A
S
K
E
E
I
K
K
I
LS---------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
38.81
20%
-328
- C5 -
0.28
2JO5
-
?
B:
[2-21]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
------
A
---
A
A
A
A
--
I
-
K
A
I
A
---
A
I
I
K
A
--
G
G
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------