@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Pm1_034780T0_k: (2019-03-29 )
WDSPVTHREHRPAPSPPQRCKVEFGRANKPIGQAIEYWDRDFIIQGYTFHCYADCTLKGDYNFPRNQGYWVTS
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-..-----...-------..10-----.-------.-----..------..-...20..-.------..--.----..30....--....40---.....------...-----50--------------.--.---.---....---..60...-.----....70..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WD-SP-----VTH-------REH------R-------P-----AP------SP-PQ
R
C
K
V
E
-F------GR--A----NKP
I
G
Q
A
I
--
E
YWDR
D
---
F
I
I
QG------
Y
T
F
-----
H
---------------
C
--
Y
---
A
---
D
C
T
L
---KGDYNFP-R----NQ
G
Y
W
VTS
28
SP3
61.79
17%
45
- C5 -
0.23
1FNH
-
A:
[93-182]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
V
S
P
-----
P
R
R
ARVTDA-
T
E
T
TITISW
R
-------
T
-----
K
T
------
E
T
-
I
T
G
F
Q
V
D
-
A
------
V
P
AN
G
----
Q
T
P
I
Q
R
T
I
--
K
P
D
V
R
S
---
Y
T
I
T
G
------
L
Q
P
-----
G
---------------
T
--
D
---
Y
---
K
I
Y
L
---
Y
T
L
N
D
N
A
-
R
----
S
S
P
V
V
I
D
A
19
Fugue
60.83
22%
58
- C2 -
-
5CYL
-
?
A:
[4-364]
NEVALNCSFDNGKGLPWRVVNELTSGTAKGTVLFARPVSLFLNYKPQASQEAHELVIGGNWSGVGYPGPYGTVASDVKGIGYRISVDAQDGVKRVIPVDNQPHALDKRVTSFSGSTTSDYLQELVLTVDPGELPAGDLKVTSVSGSATLNLWAVDRLKGEASIGSVLAVPADNYPTGVCRKPYSLI
G
P
-
A
S
-----
I
A
I
-------
G
G
G
------
P
-------
P
-----
P
P
------
P
I
-
P
K
K
C
K
V
E
-
V
------
G
R
--
E
I---
N
V
K
L
G
S
V
A
-------------------------------------------------
L
---
K
---
N
F
P
R
---
V
N
D
T
S
T
E
-
R
----
S
F
D
I
S
L
S
E
27
Fugue
60.04
23%
43
- C5 -
0.18
3PDG
-
?
A:
[1-91]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MVT
I
D
-
S
P
-----
V
A
G
-------
E
R
F
------
E
-------
A
-----
G
K
------
D
I
-
N
I
S
A
T
V
K
-----------------
S
K
T
P
V
S
K
V
--
E
F
Y
N
G
D
---
T
L
I
S
S
------
D
T
T
-----
A
---------------
P
--
Y
---
T
---
A
K
I
T
GAA
V
G
A
Y
N
L
K
-
A
VAVL
S
D
G
R
R
I
E
S
31
SP3
59.78
19%
-41
- C5 -
0.27
1SRZ
-
GABR1_RAT
A:
[92-159]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
-----
E
F
V
-------
R
I
C
------
S
-------
K
-----
S
Y
------
L
T
-
L
E
N
G
K
V
F
-
L
------
T
G
--
G
----
D
L
P
A
-----------------
L
D
G
AR----
V
E
F
-----
R
---------------
C
--
D
---
P
---
D
F
H
L
---
V
G
S
S
R
S
V
-
C
----
S
Q
G
Q
W
S
T
P
17
Fugue
59.56
19%
45
- C5 -
0.20
4IT4
5
?
A:
[6-215]
---------------------------------------------------------------------------------------------------------------------------------------------------DWYVGTEWEDKNRGLAKKVIGLQFTEMDKPTIISTVEFS
V
N
-
K
K
-----
A
T
N
-------
L
G
G
------
R
-------
P
SKYLV
S
D
------
T
Y
-
P
Q
K
H
S
L
E
-
M
------
G
T
--
S
----
L
T
A
V
D
C
Y
L
--
E
L
L
L
Q
Q
---
F
V
P
-
G
------
E
T
A
-----
A
---------------
C
--
S
---
I
---
T
T
K
T
---
G
E
R
I
E
F
E
-
L
----
K
L
E
K
I
V
K
N
12
Fugue
59.21
19%
-5
- C5 -
0.13
3R0N
-
NECT2_HUMAN
A:
[1-128]
----------------------------------------------------------------------------------------------------------------------------------------MQDVRVQVLPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQ
N
V
-
A
A
-----
F
H
P
-------
K
M
G
------
P
-------
S
-----
F
P
------
S
P
K
P
G
S
E
R
L
S
-
F
------
V
S
--
A
----
K
Q
S
T
G
Q
D
T
EA
E
L
Q
D
A
T
---
L
A
L
H
G
------
L
T
V
-----
E
---------------
D
EG
N
---
Y
---
T
C
E
F
---
A
T
F
P
K
G
S
-
V
----
R
G
M
T
W
L
R
V
20
Fugue
56.31
19%
70
- C5 -
0.22
4IT4
4
?
C:
[6-215]
---------------------------------------------------------------------------------------------------------------------------------------------------DWYVGTEWEDKNRGLAKKVIGLQFTEMDKPTIISTVEFS
V
N
-
K
K
-----
A
T
N
-------
L
G
G
------
R
-------
P
SKYL-
V
S
------
T
Y
-
P
Q
K
H
S
L
E
-
M
------
G
T
--
S
----
L
T
A
V
D
C
Y
L
--
E
L
L
L
Q
Q
---
F
V
P
-
G
------
E
T
A
-----
A
---------------
C
--
S
---
I
---
T
T
K
T
---
G
E
R
I
E
F
E
-
L
----
K
L
E
K
I
V
K
N
33
SP3
55.66
19%
67
* C5 *
0.29
1QR4
-
TENA_CHICK
A:
[1-87]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
N
P
KDLE-
V
S
D
-------
P
T
E
------
T
TLSLRWR
R
-----
P
V
------
A
K
-
F
D
R
Y
R
L
T
-
Y
------
V
S
--
P
----
S
G
K
K
N
E
M
E
--
I
P
V
D
S
T
S--
F
I
L
R
G
LDAGTE
Y
T
I
-----
S
---------------
L
--
V
---
A
---
E
------
K
G
R
H
K
S
K
-
P
----
T
T
I
K
G
S
T
V
24
Fugue
53.35
23%
12
- C3 -
-
4F0D
1
PAR16_HUMAN
A:
[2-271]
-----------------------------------------------------------------------------------MGWAAAREAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDFEALLADASKLPNLKELLQSSGDNHKRAWDLVSWILSSKVLTIHSAGKAEFE
K
I
-
Q
K
-----
L
T
G
-------
A
P
H
------
T
-------
P
-----
V
P
------
A
P
-
D
F
L
F
E
I
E
Y
F
------
D
P
--
A
----
N
A
K
F
Y
E
T
K
--
G
E
R
D
L
I
---
Y
A
F
H
G
SRL---
E
N
F
-----
H
---------------
S
--
I
---
I
---
H
N
G
L
---
H
C
H
K
T
S
L
-
F
----
G
E
G
T
Y
L
T
S
34
SP3
52.26
13%
31
- C- -
-
1TEN
-
?
?:
[803-891]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
-
A
P
SQIEV
K
D
V
-------
T
D
T
------
T
ALITWF-
K
-----
P
L
------
A
E
-
I
D
G
I
E
L
T
-
Y
------
G
I
--
K
----
D
V
P
G
D
R
T
T
--
I
D
L
T
E
D
ENQ
Y
S
I
G
N
LKPDTE
Y
E
V
-----
S
---------------
L
--
I
---
S
---
R
R
------
G
D
M
S
S
N
-
P
----
A
K
E
T
F
T
T
-
8
HHSearch
49.39
17%
-202
- C6 -
-
5XOD
-
A:
[10-48]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
------
E
P
-
A
F
W
C
S
I
A
-
Y
------
Y
E
--
L
----
N
Q
R
V
G
E
T
F
--
H
A
S
Q
P
S
---
L
T
V
D
G
------
F
T
-------------------------------------------------------------
37
SP3
49.01
17%
60
- C5 -
0.35
1J8K
-
A:
[1-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
D
R
-----
P
K
G
LAFTDV-
D
V
D
SIKIAW
E
-------
S
-----
P
Q
------
G
Q
-
V
S
R
Y
R
V
T
-
Y
------
S
S
--
P
----
E
D
G
I
H
E
L
F
--
P
A
P
D
G
E
EDT
A
E
L
Q
G
LRPGSE
Y
T
V
-----
S
---------------
V
--
V
---
A
------
L
---
H
D
D
M
E
S
Q
-
P
----
L
I
G
T
Q
S
T
A
26
Fugue
48.08
17%
33
- C4 -
-
2GRG
-
YN034_YEAST
A:
[1-98]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
-
S
S
-----
I
P
I
-------
T
E
V
------
L
-------
P
-----
R
A
VGSLTF
D
E
-
N
Y
N
L
L
D
T
-
S
------
G
V
--
A
KVIE
K
S
P
I
A
E
I
I
--
R
K
S
N
A
E
---
L
G
R
L
G
------
Y
S
V
-----
Y
EDAQYIGHAFKKAGH
F
--
I
---
V
---
Y
F
T
P
---
K
N
K
N
R
E
G
-
V
----
V
P
P
V
G
I
T
N
14
Fugue
47.88
21%
3
- C4 -
-
2HGC
-
YJCQ_BACSU
A:
[5-82]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
-
R
Y
-----
A
I
L
-------
K
E
I
------
F
-------
E
-----
G
N
------
T
P
-
L
S
--
E
N
D
-
I
------
G
V
--
T
----
E
D
Q
F
D
D
A
V
--
N
F
L
K
R
E
---
G
Y
I
I
G
------
V
H
Y
SDDRP
H
---------------
L
--
Y
---
K
LGP
E
L
T
E
---
K
G
E
-
N
Y
L
-
K
----
E
N
G
T
W
S
K
A
11
HHSearch
47.53
18%
-218
- C6 -
-
1KHX
-
SMAD2_HUMAN
A:
[270-303]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
-
A
F
W
C
S
I
A
-
Y
------
Y
E
--
L
----
N
Q
R
V
G
E
T
F
--
H
A
S
Q
P
S
---
L
T
V
D
G
------
F
T
-------------------------------------------------------------
23
Fugue
47.25
17%
110
* C4 *
-
2FQM
-
PHOSP_VSIVM
A:
[107-171]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------D
W
K
-
Q
P
-----
E
L
E
SDEHGKT
L
R
L
------
T
-------
L
-----
P
E
------
G
L
-
S
G
E
Q
K
S
Q
-
W
------
M
L
--
T
----
I
K
A
V
V
Q
S
A
--
K
H
W
N
-------------------------------------------
L
---
A
---
E
C
T
F
---
E
A
------
S
----
G
E
G
V
I
I
K
K
18
Fugue
46.10
13%
37
* C7 *
-
1SQR
-
RL35A_PYRFU
A:
[1-87]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR
I
K
-
G
V
-----
V
L
S
-------
Y
R
R
------
S
-------
K
-----
E
N
------
Q
H
-
N
N
V
M
I
I
K
-
P
LDVNSR
E
E
--
A
----
S
K
L
I
G
R
L
V
--
L
W
K
S
P
S
G--
K
I
L
K
G
------
K
I
V
-----
R
---------------
V
--
H
GTK
G
---
A
V
R
A
---
R
F
E
K
G
L
P
G
Q
----
A
L
G
D
Y
V
E
I
6
HHSearch
45.05
16%
-233
- C6 -
-
3DIT
-
MAD_DROME
C:
[260-291]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
W
A
S
I
A
-
Y
------
Y
E
--
L
----
N
C
R
V
G
E
V
F
--
H
C
N
N
N
S
---
V
I
V
D
G
------
F
T
N
------------------------------------------------------------
32
SP3
44.92
15%
-50
- C4 -
-
1UEO
-
PEN3A_PENVA
A:
[1-63]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QV
Y
K
-
G
G
-----
Y
A
R
-------
P
I
P
------
R
-------
P
-----
P
P
------
F
V
-
R
P
-----------------------
L
P
G
G
P
I
G
--
P
Y
N
G
C
P
---
V
S
C
R
G
------
I
S
F
-----
S
---------------
Q
--
A
---
R
---
S
C
C
S
---
R
L
G
R
C
C
H
-
V
----
G
K
G
Y
S
G
--
10
HHSearch
44.84
18%
-129
- C6 -
-
1MK2
1
A:
[9-42]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
-
A
F
W
C
S
I
S
-
Y
------
Y
E
--
L
----
N
Q
R
V
G
E
T
F
--
H
A
S
Q
P
S
---
M
T
V
D
G
------
F
T
-------------------------------------------------------------