@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Pm1_060210T0_kcl104: (2019-03-29 )
KGCKFKILNENRVTVAEGCCRRDEKFVVVGNKAGGSLRVKCGISC
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--------..-10..--.-----...---..20....-------....-30....-....40.-------.----.--..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KGC
K
F
K
I
--------LN-EN
R
V
--
T
-----
V
A
E
---
G
CCRRD
E
K
-------
F
V
V
V
-GNKAG
G
-
S
L
R
V
K
-C-------G----I--SC
2
Fugue
84.49
27%
-161
- C1 -
0.66
2MM2
-
?
A:
[1-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
A
N
I
--------
L
N
-
I
N
E
V
--
V
-----
I
A
T
---
G
C
V
P
A
G
G
N
-------
L
I
I
R
-
V
G
S
-
D
H
-
S
Y
L
I
R
-
A
-------
T
----
V
--
S
C
28
HHSearch
77.07
28%
-147
- C1 -
0.68
2MM0
-
?
A:
[1-43]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
V
A
N
I
--------
L
N
-
I
N
E
A
--
V
-----
I
A
T
---
G
C
V
P
A
G
G
E
-------
L
R
I
F
-
V
G
S
-
S
H
-
S
Y
L
I
K
-
A
-------
T
----
S
--
S
C
25
SP3
70.69
24%
-48
- C8 -
-
1E8Q
-
?
A:
[1-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
C
W
A
Q
S
--------
Q
G
-
Y
N
-----------------
C
C
N
N
P
S
S
-------
T
K
V
E
-
Y
T
D
A
S
G
-
Q
W
G
V
Q
-
N
-------
G
QWCG
I
DY
S
Y
4
Fugue
70.56
23%
-71
* C8 *
-
1E8P
-
?
A:
[1-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
C
W
A
Q
S
--------
Q
G
-
Y
-----------------
N
C
C
N
N
P
S
S
-------
T
K
V
E
-
Y
T
D
A
S
G
-
Q
W
G
V
Q
-
N
-------
G
----
Q
--
W
C
5
Fugue
64.35
35%
5
- C3 -
-
1PFS
-
G5P_BPPF3
A:
[1-78]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNIQITFTDSVRQGTSA
K
G
-----------------
N
P
Y
--
T
-----
F
Q
E
---
G
F
L
H
L
E
D
K
PHPLQCQ
F
F
V
E
-
S
V
I
P
A
G
-
S
Y
Q
V
P
-
Y
-------
R
----
I
--
N
V
24
SP3
56.83
22%
-102
- C1 -
0.15
1E88
-
A:
[1-41]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
---
H
C
--------
V
T
-
D
S
G
V
--
V
-----
Y
S
V
---
G
-----
M
Q
-------
W
L
K
T
Q
G
N
K
----
Q
M
L
C
T
-
C
LGN----
G
----
V
--
S
C
21
SP3
55.02
17%
-59
- C4 -
-
1LWH
-
MGTA_THEMA
A:
[392-441]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
L
E
F
--------
L
C
K
E
D
K
F
--
L
-----
V
Y
R
----
L
Y
D
D
Q
H
S
-------
L
K
V
F
-
H
N
L
S
G
E
-
E
V
V
F
E
---------
G
----
V
--
K
M
19
SP3
53.61
22%
-47
* C6 *
-
1KG1
-
?
A:
[1-60]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
R
C
R
Y
T
L
--------
C
C
-
D
G
A
L
--
K
-----
A
V
S
---
A
C
L
H
E
S
E
S
-------
C
L
V
P
-
G
D
C
C
R
G
-
K
S
R
L
T
L
C
SYGEGGN
G
----
F
--
Q
C
10
Fugue
52.88
35%
61
- C1 -
0.42
2UUX
-
?
A:
[1-55]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
A
E
C
T
V
P
I
GWSEPVKG
L
C
-
K
A
R
F
--
T
-----
R
Y
Y
CMG
N
C
C
K
V
Y
E
-------------
G
C
Y
T
G
G
-
Y
S
R
M
G
E
C
-------
A
----
R
--
N
C
18
SP3
52.56
26%
-85
- C2 -
-
1DXG
-
DESR_DESGI
A:
[1-36]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
N
-
E
G
D
V
--
Y
-----
K
-------
C
E
L
C
G
Q
-------
V
V
K
V
-
L
E
E
G
G
G
-
T
L
-
V
C
-
C
-------
G
----
E
--
D
M
7
Fugue
50.72
22%
1
- C1 -
0.30
5A4G
-
?
A:
[1-180]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------MGSATVNGPHDGHDPAAGAELKTGKRILYWRDPMVPGQRFDKPGKSPYMDMPLIPVYEEENADGAAVRIDGRVTQNLGVRTAEVKLGRLGSTERLLVP
S
E
A
L
I
R
T
--------
G
A
-
R
T
I
A
--
M
-----
V
A
K
---
G
E
G
G
F
D
P
V
-------
E
V
K
A
-
G
A
T
A
G
G
-
Q
S
E
I
L
-
E
-------
G
----
L
--
K
A
17
Fugue
50.45
22%
-13
- C4 -
-
5J4F
-
?
A:
[22-119]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EVVHFLEGVCF
E
K
L
H
I
E
V
--------
L
N
-
E
N
S
S
--
H
-----
K
E
I
---
R
I
C
M
P
K
G
A
--------
V
M
D
-
K
H
K
A
P
G
-
A
I
S
V
Q
-
V
-------
L
----
E
--
G
K
23
SP3
49.80
20%
-44
- C6 -
-
1PTQ
-
?
?:
[1-50]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
R
F
K
V
--------
Y
N
-
Y
M
S
P
--
T
-----
F
C
D
---
H
C
G
S
L
------------
L
W
-
G
L
V
K
Q
G
-
L
K
C
E
D
-
C
-------
G
----
M
--
N
V
9
Fugue
48.31
26%
-81
- C5 -
-
2Q6Q
-
SPC42_YEAST
A:
[3-64]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QQN
K
E
L
N
F
K
L
--------
R
E
-
K
Q
N
E
--
I
FELKK
I
A
E
---
T
L
R
S
K
L
E
K
-------
Y
V
D
I
-
T
K
K
L
E
D
Q
N
L
N
L
Q
-
I
-------
K
----
I
--
S
D
20
SP3
46.59
26%
18
- C1 -
-
1GPS
-
?
?:
[1-47]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KICRR
R
S
A
G
F
K
G
--------
P
C
-
M
S
N
K
--
N
-----
C
A
Q
---
V
C
--
Q
Q
E
G
-------
W
-
G
G
-
G
N
C
D
G
P
-
F
R
R
C
K
-
C
-------
I
----
R
--
Q
C
13
Fugue
45.76
27%
-118
- C5 -
-
5JI4
-
?
A:
[1-37]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
C
E
C
D
V
--------
N
G
-
E
T
Y
T
--
V
-----
S
S
S
---
E
E
C
E
R
L
C
R
-------
K
L
G
V
-
T
N
------
C
R
V
H
-
C
-------
G
---------
26
SP3
41.65
26%
67
* C4 *
-
1PKP
-
?
?:
[4-77]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------INPNK
L
E
L
E
E
R
V
--------
V
A
-
V
N
R
V
AK
V
-----
V
K
G
---
G
R
R
L
R
F
S
A
-------
L
V
V
V
-
G
D
K
N
G
H
V
G
F
G
T
G
-
K
-------
A
----
Q
--
E
V
31
HHSearch
40.91
35%
15
- C5 -
-
2DC0
-
?
A:
[150-175]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
A
V
--
A
-----
V
A
L
---
G
I
G
L
------------
A
S
L
-
G
T
D
T
G
G
-
S
I
R
I
P
-------------------
12
Fugue
40.18
25%
3
- C2 -
-
4O6D
5
POLG_WNV9
A:
[19-377]
LYFQSNADTGCAIDISRQELRCGSGVFIHNDVEAWMDRYKYYPETPQGLAKIIQKAHKEGVCGLRSVSRLEHQMWEAVKDELNTLLKENGVDLSVVVEKQEGMYKSAPKRLTATANNTFVVDGPETKECPTQNRAWNSLEVEDFGFGLTSTRMFLKVRESNTTECDSKIIGTAVKNNLAIHSDLSYWIESRLNDTWKLERAVLGEVKSCTWPETHTLWGDGILESDLIIPVTLAGPRSNHNRRPGYKTQNQGPWDEGRVEIDF
D
Y
C
P
--------------
G
T
T
V
--
T
-----
L
S
E
---
S
C
G
H
R
G
-
P
-------
A
T
R
T
-
T
T
E
S
G
K
-
L
I
T
D
W
-
C
-------
C
----
R
--
S
C
27
SP3
39.45
15%
20
* C1 *
-
1AXH
-
?
?:
[1-37]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
P
T
C
---
I
--------
P
S
-
G
Q
P
C
--
P
-----
Y
N
E
---
N
C
C
S
Q
S
----------
C
T
F
-
K
E
N
E
N
G
-
N
T
V
K
R
-
C
-------
D
---------