@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SSFL02_043540T0_kcl38: (2019-03-29 )
AAVLPQLCKVEMFDKNARFVGMARGNWDKDFVIKGHTIKCNTRCETKDVVLPKNWSVKG
Atome Classification :
(20 SA)
--------....----...-.-.10----------...----------......-20...------..-------...-30---....-----..-----.--.-.40----..-----.---...--------.----.--50-----.--.-------------.......
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------AAV
L
----
P
Q
L
-
C
-
K
V
-----------
E
M
F----------DKNA
R
F
-
V
G
M
AR------GN-------WDK-
D
----
F
V
I
K-----G
H
-----
T
--
I
-
K
CN----TR-----C---ETK--------
D
----
V
--V------L--P-------------KNWSVKG
39
SP3
84.43
28%
0
- C4 -
-
1QUB
-
APOH_HUMAN
A:
[244-319]
SCKVPVKK
A
T
V
V
----
Y
Q
G
-
E
-
R
V
-----------
K
I
Q
----------
E
K
F
K
N
---
G
M
L
H
------
G
---------
D
K
V
S
----
F
F
C
K
-----
N
K
-----
E
--
K
-
K
C
S
YTED
A
Q
-----
C
---
I
D
G
--------
T
----
I
--
E
------
V
--
P
-------------
K
C
F
K
E
H
T
26
Fugue
68.19
22%
31
- C5 -
0.34
2L7X
-
?
A:
[1-77]
--------
R
E
L
K
----
P
Q
T
-
C
-
T
I
CETTPVNAIDA
E
M
H
----------
D
L
N
C
S
Y
N
I
C
P
Y
C
------
A
S
-------
R
L
T
-
S
----
D
G
L
A
-----
R
H
-----
V
--
T
-
Q
C
P
----
K
R
-----
K
---
E
K
V
--------
E
----
E
--
T
ELYLNL
E
--
R
-------------
I
P
W
V
V
R
K
34
SP3
66.67
16%
115
- C4 -
-
1GJW
-
?
A:
[573-636]
----GKFE
N
L
T
T
----
K
D
L
---
V
M
-----------
Y
S
Y
----------
E
K
N
G
Q
K
-
I
V
I
A
A
------
N
V
-------
G
K
E
-
P
----
K
E
I
T
-----
G
G
-----
R
--
V
-
W
N
G
----
K
W
-----
S
---
D
E
E
--------
K
----
V
--
V
------
L
K-
P
-------------
L
E
F
A
L
V
V
6
HHSearch
66.24
28%
-109
- C8 -
-
5DVW
1
VP30_EBOZM
A:
[78-120]
-------------------------------------
S
----------
D
K
G
G
S
F
-
E
A
A
L
W
------
Q
Q
-------
W
D
R
-
Q
SLIM
F
I
T
A
-----
F
L
-----
N
--
I
-
A
L
Q
----
L
P
-----
C
---
E
S
S
--------
A
----
V
--
V
------
V
-----------------------
35
SP3
65.59
22%
17
- C5 -
0.09
1ICF
1
HG2A_HUMAN
I:
[1-65]
-----------
L
-----
T
K
-
C
-
Q
E
-----------
E
V
S
----------
H
I
P
A
V
H
-
P
G
S
F
R
------
P
K
-------
C
D
E
-
N
-------------
G
N
YL---
P
--
L
-
Q
C
Y
----
G
S
IGYCW
C
---
V
F
P
--------
N
G---
T
--
E
------
V
--
P
--------------
N
T
R
S
R
G
32
SP3
65.39
22%
-42
- C5 -
-
1MLA
-
?
?:
[128-197]
---GTGAM
A
A
I
I
GLDD
A
S
I
-
A
-
K
A
-----------
C
E
E
----------
A
A
E
G
Q
V
-
V
S
P
V
N
------
F
N
-------
S
P
G
-
Q
----
V
V
I
A
-----
G
H
-----
K
EA
V
E
R
A
G
----
A
A
-----
C
---
K
A
A
--------
G
----
A
KR
A
------
L
--
P
-------------
L
P
V
S
---
8
HHSearch
64.51
31%
-59
- C8 -
-
5T3W
-
NCAP_MABVM (first)
B:
[121-163]
-------------------------------------
L
----------
D
K
G
G
Q
F
-
E
A
A
L
W
------
Q
G
-------
W
D
K
-
R
SISL
F
V
Q
A
-----
A
L
-----
Y
--
V
-
M
N
N
----
I
P
-----
C
---
E
S
S
--------
I
----
S
--
V
------
Q
-----------------------
9
HHSearch
63.31
28%
-96
- C8 -
-
3V7O
-
VP30_EBORR
B:
[171-213]
-------------------------------------
S
----------
D
K
G
G
N
F
-
E
A
A
L
W
------
Q
Q
-------
W
D
R
-
Q
SLIM
F
I
S
A
-----
F
L
-----
N
--
I
-
A
L
Q
----
I
P
-----
C
---
E
S
S
--------
S
----
V
--
V
------
V
-----------------------
19
Fugue
62.91
11%
-89
- C9 -
-
2MM2
-
?
A:
[1-65]
------------------
N
-
C
-
T
A
-----------
N
I
L
----------
N
I
N
E
V
V
-
I
A
T
G
C
------
V
P
-------
A
G
G
-
N
----
L
I
I
R
VGSDH
S
Y
-----
L
--
I
-
R
A
T
----
V
S
-----
C
GLS
L
N
P
--------
S
----
Q
--
S
------
F
--
I
-------------
N
G
E
S
L
A
S
3
HHSearch
62.51
16%
-14
- C9 -
-
2MM0
-
?
A:
[2-59]
--------------------
C
-
V
A
-----------
N
I
L
----------
N
I
N
E
A
V
-
I
A
T
G
C
------
V
P
AGGELRI
F
V
G
-
S
------
S
H
-----
S
Y
-----
L
--
I
-
K
A
T
----
S
S
-----
C
---
G
L
S
LT------
N
----
Q
--
V
------
F
--
I
-------------
N
G
E
S
V
Q
-
41
SP3
60.83
15%
39
* C9 *
-
1PM3
-
?
A:
[0-77]
-------H
M
R
I
V
----
E
E
M
-
V
-
G
K
-----------
E
V
L
----------
D
S
S
A
K
V
-
I
G
K
V
K
DVEVDI
E
S
-------
Q
A
I
-
E
----
S
L
V
L
-----
G
K
GGGET
I
--
V
-
P
Y
E
----
M
V
-----
K
---
K
I
G
--------
D
----
K
--
I
------
L
--------------------
L
K
G
37
SP3
56.79
13%
77
* C4 *
-
1OAC
-
AMO_ECOLI
A:
[5-88]
--AHMVPM
D
K
T
L
----
K
E
F
G
A
-
D
V
-----------
Q
W
D
----------
D
Y
-
A
Q
L
-
F
T
L
I
K
------
D
G
AYVKVKP
G
A
Q
-
T
----
A
I
V
N
-----
G
Q
-----
P
--
L
-
A
L
Q
----
V
P
-----
V
---
V
M
K
--------
D
NK--
A
--
W
------
V
--
S
DTFINDVFQSGLD
Q
T
F
Q
V
E
-
23
Fugue
56.50
20%
41
- C6 -
-
1JJD
-
MT_SYNE7
A:
[4-55]
----TLVK
C
A
C
E
----
P
C
L
-
C
-
N
V
-----------
D
--------------
P
S
K
A
-
I
D
R
N
G
------
L
Y
-------
Y
C
S
-
E
----
A
C
A
D
-----
G
H
-----
T
----
G
G
S
----
K
G
-----
C
---
G
H
T
--------
G
----
C
-----------------------------
N
C
H
G
38
SP3
55.19
20%
-8
- C5 -
0.03
1HDL
-
ISK5_HUMAN
A:
[1-55]
--------
K
N
E
D
----
Q
E
M
-
C
H
E
F
-----------
Q
A
F
----------
M
K
N
G
K
L
-
F
----------
C
P
-------
Q
D
K
-
K
----
F
F
Q
S
-----
L
D
-----
G
--
I
-
M
F
I
----
N
K
-----
C
---
A
T
C
--------
K
----
M
--
I
------
L
--
E
-------------
K
E
A
K
S
Q
-
40
SP3
55.08
23%
1
- C5 -
0.14
1SS3
-
ALL6_OLEEU
A:
[1-50]
-------------------------------------------------
D
E
A
Q
F
-
K
-
E
C
Y
------
D
T
-------
C
H
K
-
E
----
C
S
D
K
-----
G
N
GFTFC
E
--
M
-
K
C
D
----
T
D
-----
C
---
S
V
K
--------
D
----
V
--
K
------
E
--
K
L------------
E
N
Y
K
P
K
N
22
Fugue
53.87
13%
61
- C5 -
0.16
1P9K
-
YBCJ_ECOLI
A:
[1-79]
--------
G
S
M
I
----
H
R
M
-
S
-
N
M
-----------
A
T
F
SLGKHPHVEL
C
D
L
L
K
L
-
E
G
W
S
E
------
S
G
-------
A
Q
A
-
K
----
I
A
I
A
-----
E
G
-----
Q
--
V
-
K
V
D
----
G
A
-----
V
---
E
T
R
KRCKIVAG
Q
----
T
--
V
------
S
FA
G
-------------
H
S
V
Q
V
V
A
36
SP3
50.23
13%
-27
- C4 -
-
1AGG
-
?
?:
[1-48]
------------------------------------------------
E
D
N
C
I
A
-
E
D
Y
G
K
------
C
T
-------
W
G
G
-
T
----
K
C
C
R
-----
G
R
-----
P
--
C
-
R
C
S
MIG-
T
N
-----
C
---
E
C
T
--------
P
----
R
--
L
------
I
--
M
-------------
E
G
L
S
F
A
-
33
SP3
49.49
20%
-3
- C9 -
-
1C0M
-
POL_RSVP
A:
[217-269]
----------
V
L
----
T
E
G
-
P
-
P
V
-----------
K
I
R
----------
I
E
T
-----
G
E
W
E
------
K
G
-------
W
N
V
-
L
----
V
W
G
R
-----
G
Y
-----
A
--
A
-
V
K
N
----
R
----------
D
T
D
--------
K
----
V
--
I
------
W
V-
P
-------------
S
R
K
-
V
K
P
18
Fugue
48.59
20%
48
* C6 *
-
2B9K
-
BLCI_BACIU
A:
[1-47]
--------------------------------------------------
A
I
K
L
-
V
Q
S
P
N
------
G
N
-------
F
A
A
-
S
----
F
V
L
D
-----
G
T
-----
K
--
W
-
I
F
K
----
S
K
-----
Y
---
Y
D
S
--------
S
KGYW
V
--
G
------
I
--
Y
-------------
E
V
W
D
R
K
-
17
Fugue
46.14
12%
23
- C9 -
-
2KAF
-
R1A_CVHSA
A:
[1-67]
------GS
E
E
H
F
----
V
E
T
-
V
-
S
L
-----------
A
G
S
----------
Y
R
D
W
S
Y
-
S
G
-
Q
R
------
T
E
-------
L
G
V
-
E
----
F
L
K
R
-----
G
D
-----
K
--
I
-
V
Y
H
----
T
L
-----
E
---
S
P
V
--------
E
----
F
--
H
------
L
--
D
-------------
G
E
V
L
S
L
D