@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SSFL14_3_119180T0_kcl4: (2019-03-29 )
GLKDCQVSLTATSEARRSFWDTQYADYNDDVEISAGRHKFVIHVEQGCGGSKVSGTIPPHHL
Atome Classification :
(20 SA)
-----------------------.......------.------.10-..---.......--------20--...-------.--.--.----.---..-30.--.----..----....---40--------..-..---.-----.---.--.50------.---.......-.60.
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------GLKD
C
Q
V
------
S
------
L
T
--
A
T
---
S
E
A
R
R
S
F--------W---DTQ-------Y--A--D----Y---ND-
D
V
E
--I----SA----G
R
H
K
---
F
V
--------
I
H
-VE---Q-----G---C--GG-------S---KVSGTIP-PHHL
5
PsiBlast_PDB
83.30
31%
0
- C- -
-
1MG3
-
CYCL_PARDE
D:
[25-71]
----------------------------------------------------
T
E
A
V
K
H
F
--------
L
---
E
T
G
-------
E
--
N
--
V
----
Y
---
N
E
-
D
P
E
--
I
----
L
P
----
E
A
E
E
---
L
Y
--------
A
G
-
M
C
---
S
-----
G
---
C
--
H
G
-------
H
---
Y
A
E
G
K
I
G
-
P
---
4
PsiBlast_PDB
83.30
31%
0
- C- -
-
1MG2
-
CYCL_PARDE
D:
[25-71]
----------------------------------------------------
T
E
A
V
K
H
F
--------
L
---
E
T
G
-------
E
--
N
--
V
----
Y
---
N
E
-
D
P
E
--
I
----
L
P
----
E
A
E
E
---
L
Y
--------
A
G
-
M
C
---
S
-----
G
---
C
--
H
G
-------
H
---
Y
A
E
G
K
I
G
-
P
---
53
Fugue
72.76
26%
32
- C13 -
-
3M45
3
CADM2_MOUSE
C:
[9-105]
--------QFPLTQNVTVVEGGT
A
I
L
T
C
R
V
DQNDNT
S
------
L
Q
--
W
S
---
N
P
A
Q
Q
T
L
--------
Y
F--
D
D
K
-------
K
--
A
--
L
----
R
---
D
N
-
R
I
E
--
L
V---
R
A
----
S
W
H
E
---
L
S
--------
I
S
-
V
--------------------------
S
---
D
V
S
L
S
D
E
-
G
Q
Y
T
33
SP3
65.06
20%
46
- C13 -
-
1F00
-
EAE_ECO27
I:
[753-841]
TLTIDDGNIEIVGTGVKGKLPTV
W
L
Q
Y
G
Q
V
------
N
------
L
K
--
A
S
---
G
G
N
G
K
Y
T
--------
W
RSA
N
P
A
-------
I
--
A
SV
D
----
A
---
S
S
-
G
Q
V
--
T
----
L
K
----
E
K
G
T
---
T
T
--------
I
S
-
V
I
---
S
-----
S
------
D
N
-------
Q
---
T
A
T
Y
T
I
A
T
P
N
S
-
36
SP3
61.23
22%
47
- C13 -
-
1TIU
-
?
?:
[1-89]
-----------------LIEVEK
P
L
Y
G
V
E
V
------
F
VGETAH
F
E
--
I
E
L--
S
E
P
D
V
H
G
Q-------
W
KL-
K
G
Q
-------
P
--
L
--
T
----
A
---
S
P
-
D
C
E
--
I
----
I
E
DG--
K
K
H
I
---
L
I
--------
L
H
N
C
Q
LGM
T
-----
G
EVS
F
QA
A
N
-------
A
---
K
S
A
A
N
L
K
-
V
K
E
L
32
SP3
59.21
20%
-33
- C15 -
0.19
1S0Y
1
?
B:
[2-56]
-----------------------
P
F
I
E
C
H
I
------
A
-------
T
--
G
L
---
S
V
A
R
K
Q
Q
--------
L
---
I
R
D
-------
V
--
I
--
D
----
V
---
T
N
-
K
---------
S
I
----
G
S
D
P
KII
N
V
--------
L
L
-
V
E
---
H
-----
A
---
E
--
A
N
-------
M
---
S
I
S
G
R
-------
31
SP3
57.08
19%
-4
- C13 -
-
1S3A
-
NDUA2_HUMAN
A:
[15-99]
-----------------------
G
L
R
E
I
R
I
------
H
------
L
C
--
Q
R
SPG
S
Q
G
V
R
D
F
--------
I
---
E
K
R
-------
Y
--
V
--
E
----
L
KKA
N
P
-
D
L
P
--
I
----
L
I
RECS
D
V
Q
P
----
K
--------
L
W
-
A
R
---
Y
-----
A
---
F
--
G
Q
-------
E
---
T
N
---
V
P
-
L
N
N
F
38
SP3
56.01
22%
62
- C9 -
-
1UOY
-
BUBL_PENBR
A:
[1-64]
------------------DTCGS
G
Y
N
V
D
Q
R
------
R
------
T
N
--
S
G
---
C
K
A
G
N
G
-------------
D
R
H
-------
F
CG
C
--
D
----
R
---
T
G
-
V
V
E
--
C
----
K
G
----
G
-------
K
--------
W
T
-
E
V
---
Q
-----
D
---
C
--
G
S
-------
S
---
S
C
K
G
T
S
N
-
G
G
A
T
44
Fugue
54.59
21%
-36
- C15 -
0.12
1S0Y
1
?
B:
[2-56]
-----------------------
P
F
I
E
C
H
I
------
A
-------
T
--
G
L
---
S
V
A
R
K
Q
Q
--------
L
---
I
R
D
-------
V
--
I
--
D
----
V
---
T
N
-
K
S
I
--
G
----
S
D
----
P
K
I
I
---
N
V
--------
L
L
-
V
E
---
H
-----
A
---
E
--
A
N
-------
M
---
S
I
S
G
R
-------
51
Fugue
54.48
11%
-9
* C13 *
-
3E8V
1
?
A:
[1-82]
----------AKGSVLVTDAEGQ
P
V
A
D
A
T
V
------
E
------
F
K
--
V
Y
---
N
Y
A
E
F
Y
T
--------
V
---
A
T
K
-------
H
--
T
--
D
----
R
---
S
G
-
H
A
S
--
L
----
T
A
----
G
K
G
D
---
M
L
--------
V
W
-
A
S
---
K
-----
D
---
G
--
R
F
-------
G
---
Y
S
K
L
S
F
G
-
K
D
N
E
41
Fugue
54.23
19%
39
- C13 -
-
2N2U
-
?
A:
[1-77]
------------------------
M
V
D
L
K
I
------
D
------
V
S
--
D
D
---
E
E
A
E
K
I
I
--------
R
---
E
I
R
EQWPKAT
V
--
T
--
R
----
T
---
N
G
-
D
I
K
--
L
----
D
A
----
Q
T
E
K
---
E
A
--------
E
K
-
M
E
---
K
-----
A
---
V
--
K
K
VKPNATI
R
---
K
T
G
G
S
L
E
-
H
H
H
H
45
Fugue
52.93
14%
136
- C15 -
0.33
2C9L
-
BZLF1_EBVB9
Y:
[1-63]
-----------------------
M
L
E
I
K
R
Y
------
K
------
N
R
--
V
A
---
A
R
K
S
R
A
K
--------
F
---
K
Q
L
-------
L
--
Q
--
H
----
Y
---
R
E
V
A
A
A
--
K
----
S
S
----
E
N
D
R
---
L
R
--------
L
L
-
L
K
---
Q
-----
M
---
C
--
P
S
-------
L
---
D
V
D
S
I
I
P
-
R
T
P
D
46
Fugue
52.66
14%
-75
- C15 -
0.32
5SZX
-
BZLF1_EBVB9
A:
[1-62]
-----------------------
L
E
I
K
R
Y
K
------
N
------
R
V
--
A
S
---
R
K
S
R
A
K
F
--------
K
---
Q
L
L
-------
Q
--
H
--
Y
----
R
---
E
V
-
A
A
A
--
K
----
S
S
----
E
N
D
R
---
L
R
--------
L
L
-
L
K
---
Q
-----
M
---
C
--
P
S
-------
L
---
D
V
D
S
I
I
P
-
R
T
P
D
39
Fugue
52.33
12%
65
- C13 -
-
5JMB
-
?
A:
[3-93]
-----AVTVDDLVEGIAFSITHD
S
E
N
P
N
I
V
------
Y
------
L
K
--
S
L
M--
P
S
S
Y
Q
V
C
--------
W
---
Q
H
P
-------
Q
--
G
--
R
----
S
---
Q
E
-
R
E
V
--
T
LQMP
F
E
----
G
K
Y
E
---
V
T
--------
F
G
-
V
Q
---
T
-----
R
---
G
--
G
I
-------
V
YGN
P
A
T
F
T
I
D
-
S
F
C
A
30
SP3
50.54
20%
-7
- C13 -
-
1D1L
-
RCRO_LAMBD
A:
[1-61]
-------------------------
M
E
Q
R
I
------
T
------
L
--------
K
D
Y
A
M
R
F
--------
G
---
Q
T
K
-------
T
--
A
--
K
DLGV
Y
---
Q
S
-
A
I
N
KA
I
----
H
A
----
G
R
K
--------------
I
F
-
L
T
---
I
-----
N
---
A
--
D
G
-------
S
---
V
Y
A
E
E
V
K
-
P
W
P
S
3
PsiBlast_PDB
49.90
31%
-47
- C15 -
0.16
2GC7
1
CYCL_PARDE
D:
[25-71]
----------------------------------------------------
T
E
A
V
K
H
F
--------
L
---
E
T
G
-------
E
--
N
--
V
----
Y
---
N
E
-
D
P
E
--
I
----
L
P
----
E
A
E
E
---
L
Y
--------
A
G
-
M
C
---
S
-----
G
---
C
--
H
G
-------
H
---
Y
A
E
G
K
I
G
-
P
---
12
HHSearch
49.12
38%
-85
- C15 -
0.09
5JK7
-
VPR_HV1N5
H:
[27-74]
------------------------------------------------
K
---
S
E
A
V
R
H
F
PRIWLHNL
G
---
Q
H
I
-------
Y
--
E
--
T
----
Y
---
G
D
-
T
W
---------
A
----
G
V
E
A
---
I
I
RILQQLLF
I
H
-
F
R
---
I
-------------------------------------
35
SP3
48.71
14%
48
- C15 -
0.32
1S0Y
1
?
A:
[2-63]
-------------------------
P
M
I
S
C
------
D
------
M
R
YG
R
T
---
D
E
Q
K
R
A
L
--------
S
----------------
A
--
G
----
L
---
L
R
-
V
I
S
--
E
----
A
T
----
G
E
P
R
ENI
F
F
--------
V
I
-
R
E
---
G
SGINF
V
---
E
--
H
G
-------
E
---
H
L
P
D
Y
V
P
-----
2
PsiBlast_PDB
48.60
31%
-42
- C15 -
0.13
2GC4
-
CYCL_PARDE
D:
[25-71]
----------------------------------------------------
T
E
A
V
K
H
F
--------
L
---
E
T
G
-------
E
--
N
--
V
----
Y
---
N
E
-
D
P
E
--
I
----
L
P
----
E
A
E
E
---
L
Y
--------
A
G
-
M
C
---
S
-----
G
---
C
--
H
G
-------
H
---
Y
A
E
G
K
I
G
-
P
---
1
PsiBlast_PDB
48.60
31%
1
- C15 -
0.14
2MTA
1
CYCL_PARDE
C:
[25-71]
----------------------------------------------------
T
E
A
V
K
H
F
--------
L
---
E
T
G
-------
E
--
N
--
V
----
Y
---
N
E
-
D
P
E
--
I
----
L
P
----
E
A
E
E
---
L
Y
--------
A
G
-
M
C
---
S
-----
G
---
C
--
H
G
-------
H
---
Y
A
E
G
K
I
G
-
P
---