@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : US0064_115210T0_kcl11: (2019-03-29 )
GADTRLVPGCLVKLYRPPKYIGCFDRSILVGAKCIPVQTTWKIKGHDISVWNGCSTVKGINLPKGWFVKGE
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..10-......---.-.----20.----.---------.-..----...30--........-----------.--40------..--.-.....---.50.--..-----.-..-..60--..--..------.---------....70
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GADTRL
V
--
P
G
C
L
-
V
K
LYRP---P-
K
----
Y
I
G----C---------F-DR----
S
I
L
V---G
A
K
C
I
P
V
Q
-----------
T
--
T
-------
W
K
--
I
-KG
H
D
I
---
S
V
WN--GC-----S-TV-KGI---NL--PK------
G
---------
W
F
VKGE
44
SP3
59.87
18%
-29
- C9 -
0.30
1QRE
-
CAH_METTE
A:
[38-247]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TVDEFSNIRENPVTPWNPEPSAPVIDPTAYIDPQASVIGEVTIGANVMVSPMASIRSDEGMPIFVGDRSNVQDGVVLHALETINEEGEPIEDNIVEVDGKEYAVYI
G
N
N
V
S
L
A
--
H
Q
S
Q
-
V
---
H
G
---
P
-
A
----
A
V
G
----------------
D
D
----
T
F
-
I
---
G
M
Q
A
F
V
F
K
-----------
S
--
K
-------
V
------
G
N
N
C
---
V
L
E
P
--
R
S
AAIG-
V
-
T
I
P
D
G
R
---
Y
I
--
P
A
------
G
---------
M
V
V
T
S
Q
29
Fugue
49.23
24%
30
- C6 -
-
5LG9
-
?
A:
[1-156]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEKGAYLVFDNASNGTLFIVWKKEKVENALMFIKPTKEVPEFKFVNRNGKNELIRNLQSDKKLFYSGICQFVKEAKDI
K
G
K
L
T
L
L
--
Q
H
F
D
-
S
S
F
--
P
---
I
-
K
---------------------
V
-
D
L
----
Y
F
L
K
---
G
S
K
V
M
P
L
N
-----------
T
GE
P
-------
F
V
--
V
-
Q
D
I
D
A
---
M
S
V
L
PK
G
S
-----
S
-
S
L
-
K
V
K
---
T
M
--
A
K
------
D
---------
M
F
V
S
R
G
48
SP3
48.94
12%
-32
- C9 -
-
3TDT
2
?
?:
[1-274]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKIDGQWVTHQWLKKAVLLSFRINDNKVMDGAETRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYV
D
E
G
T
M
V
D
--
T
W
A
T
-
V
---
G
S
---
C
-
A
----
Q
I
G
KNVH
L
---------
S
-
G
G
----
V
G
I
G
---
G
V
L
E
P
L
Q
A
-----------
N
--
P
-------
T
I
--
I
--
E
D
N
C
---
F
I
G
A
--
R
S
-----
E
-
V
V
-
E
G
V
---
I
V
--
E
E
------
G
---------
S
V
I
-
S
M
50
SP3
48.52
18%
25
* C9 *
0.20
1HV9
2
GLMU_ECOLI
A:
[4-452]
NAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAANELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATDEQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQRLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEI
G
D
N
V
N
I
G
--
A
G
T
I
-
T
C
N
Y
D
G
---
A
-
N
KFKT
I
I
G
----------------
D
D
----
V
F
-
V
---
G
S
D
T
---------------------------
Q
--
L
-
V
A
P
-
V
---
T
V
G
K
--
G
A
TIAAG
T
-
T
V
-
T
R
----
N
V
--
G
E
------
N
---------
A
L
A
I
S
R
43
SP3
46.79
14%
29
- C9 -
-
1LXA
-
?
?:
[1-262]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIDKSAFVHPTAIVEEGASI
G
A
N
A
H
I
G
--
P
F
C
I
-
V
---
G
P
---
H
-
V
----
E
I
G
----------------
E
G
----
T
V
-
L
---
K
S
H
V
V
-----------------------------
V
--
N
G
H
T
---
K
I
G
R
--
D
N
-----
E
-
I
Y
-
Q
F
A
SIG
E
V
--
N
Q
------
D
---------
L
K
Y
A
G
E
33
Fugue
46.31
20%
15
- C9 -
0.18
1EWW
-
?
A:
[1-90]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
--
G
S
C
T
-
N
T
N
S
Q
L
---
S
-
A
----
N
S
K
----
C
EKSTLTNCY
V
-
D
K
----
S
E
V
Y
---
G
T
T
C
T
G
S
R
FDGVTITTSTS
T
--
G
-------
S
R
--
I
-
S
G
P
G
C
---
K
I
-
S
--
T
C
-----
I
-
I
T
-
G
G
V
---
P
A
--
P
S
AACKIS
G
---------
C
T
F
S
A
N
31
Fugue
45.38
24%
-62
- C6 -
-
1UW1
1
?
A:
[9-75]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
K
K
T
--
N
W
-
L
-
K
R
I
Y
R
V
---
R
-
P
----
C
V
--------------------------------
K
C
K
V
A
P
-----------
R
--
N
-------
W
K
--
V
-
K
N
K
H
L
---
R
I
Y
N
--
M
C
-----
K
-
T
C
-
F
N
N
---
S
I
--
D
I
------
G
DDTYHGHDD
W
L
M
Y
A
D
45
SP3
44.94
15%
13
- C9 -
0.28
1HV9
1
GLMU_ECOLI
A:
[252-452]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRPGAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEI
G
D
N
V
N
I
G
--
A
G
T
I
-
T
C
N
Y
D
G
---
A
N
K
----
F
K
T
----
I
---------
I
-
G
D
----
D
V
F
V
---
G
S
D
T
---------------------------
Q
--
L
-
V
A
P
-
V
---
T
V
G
K
--
G
A
TIAAG
T
-
T
V
-
T
R
----
N
V
--
G
E
------
N
---------
A
L
A
I
S
R
27
Fugue
44.79
20%
6
* C11 *
-
1Y9L
1
MXIM_SHIFL
A:
[6-115]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EKEWHIVPV
S
K
D
Y
F
S
I
--
P
N
D
L
-
L
W
S
F
N
T
---
T
-------------------------
N
K
----
S
I
N
V
---
Y
S
K
C
I
S
G
K
-----------
A
--
V
-------
Y
S
--
F
-
N
A
G
K
F
---
M
G
N
F
--
N
V
-----
K
-
E
V
-
D
G
--------------------------
C
F
M
D
A
Q
20
HHSearch
43.10
33%
-35
* C12 *
-
5W2L
-
B:
[99-149]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
--
P
G
Q
V
-
Y
R
L
I
A
P
G--
P
-
A
----
T
P
M
----
L
---------
F
-
E
K
DISR
R
P
L
E
LAG
C
A
S
C
L
T
V
Q
-----------
D
--
N
-------
W
T
--
L
-
E
-----------------------------------------------------------
41
SP3
42.83
12%
52
- C9 -
0.35
1V3W
4
?
A:
[1-173]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAIYEINGKKPRIHPSAFVDENAVVIGDVVL
E
E
K
T
S
V
W
--
P
S
A
V
-
L
R
G
D
I
E
---
Q
-
I
----
Y
V
G
----------------
K
Y
----
S
N
-
V
---
Q
D
N
V
---------------
S
--
I
-------
H
T
--
S
-
H
G
Y
P
T
---
E
I
G
E
--
Y
V
TIGHN
A
-
M
V
-
H
G
A
---
K
V
--
G
N
------
Y
---------
V
I
I
G
I
S
47
SP3
42.56
28%
16
- C4 -
-
1A48
-
?
?:
[2-306]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SITKTELDGILPLVARGKVRDIYEVDAGTLLFVATDRISAYDVIMENSIPEKGILLTKLSEFWFKFLSNDVRNHLVD
I
A
P
G
K
T
I
--
F
D
Y
L
-
P
A
K
L
S
E
---
P
-
K
----
Y
K
T
----
Q
---------
L
E
D
R
----
S
L
L
V
H--
K
H
K
L
I
P
L
E
-----------
V
--
I
-------
V
R
GY
I
-
T
G
S
A
W
---
K
E
Y
V
--
K
T
-----
G
-
T
V
-
H
G
L
---
K
Q
--
P
Q
------
G
----------
L
K
E
S
Q
46
SP3
40.79
14%
-7
- C9 -
0.34
1HM9
1
GLMU_STRPN
A:
[261-468]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VSFVNPEATYIDIDVEI
A
P
E
V
Q
I
E
--
A
N
V
I
-
L
---
K
G
---
Q
-
T
----
K
I
G
----------------
A
E
----
T
V
-
L
---
T
N
G
T
Y
V
V
D
-----------
S
--
T
IGAG---
A
V
--
I
-
T
N
S
M
I
EES
S
V
A
D
--
G
V
-----
T
-
V
G
-
P
Y
A
---
H
I
--
R
P
------
N
---------
S
S
L
-
G
A
2
PsiBlast_PDB
39.88
32%
-13
- C13 -
-
5CH7
2
?
B:
[20-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
I
G
C
Q
-----------
T
--
C
TVACKKL
W
T
--
T
G
P
G
Q
D
F
---
M
Y
W
R
--
N
V
-----
E
-
T
A
-
P
G
L
---
G
Y
--
P
R
------
N
---------
W
Q
T
K
G
-
34
Fugue
38.95
31%
10
- C8 -
-
4QMF
-
KRR1_YEAST
B:
[7-181]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ESSFMTLFPKYRESYLKTIWNDVTRALDKHNI
A
C
V
L
D
L
V
--
E
G
S
M
T
V
K
T
T
R
K
TYD
P
-
A
----
I
I
L
----
K
---------
A
-
R
D
----
L
I
K
L
---
L
A
R
S
V
P
F
P
-----------
Q
--
A
-------
V
K
--
I
-
L
Q
D
D
M
---------
A
C
-----
D
-
V
I
-
K
I
G
---
N
F
VT
N
K
------
E
---------
R
F
V
K
R
R
1
PsiBlast_PDB
38.77
32%
-23
* C13 *
-
4YDD
2
?
B:
[20-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
I
G
C
Q
-----------
T
--
C
TVACKKL
W
T
--
T
G
P
G
Q
D
F
---
M
Y
W
R
--
N
V
-----
E
-
T
A
-
P
G
L
---
G
Y
--
P
R
------
N
---------
W
Q
T
K
G
-
3
PsiBlast_PDB
38.38
32%
-10
- C13 -
-
5CHC
-
?
B:
[20-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
I
G
C
Q
-----------
T
--
C
TVACKKL
W
T
--
T
G
P
G
Q
D
F
---
M
Y
W
R
--
N
V
-----
E
-
T
A
-
P
G
L
---
G
Y
--
P
R
------
N
---------
W
Q
T
K
G
-
19
HHSearch
38.36
19%
-754
- C- -
-
3NCT
-
PSIB1_ECOLI
B:
[21-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
R
--
A
-
A
G
S
D
E
---
R
R
E
L
--
T
H
-----
A
-
V
M
-
R
E
L
---
D
A
--
P
D
------
N
---------
W
T
M
N
G
E
4
PsiBlast_PDB
37.23
32%
-33
- C13 -
-
5E7O
1
?
B:
[20-65]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
C
I
G
C
Q
-----------
T
--
C
TVACKKL
W
T
--
T
G
P
G
Q
D
F
---
M
Y
W
R
--
N
V
-----
E
-
T
A
-
P
G
L
---
G
Y
--
P
R
------
N
---------
W
Q
T
K
G
-
35
Fugue
37.20
19%
52
- C11 -
-
2JMB
-
?
A:
[1-79]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQH
P
Y
V
G
I
W
V
TA
D
G
R
I
-
R
Q
E
L
L
P
---
N
--------
G
----
R
---------
Y
-
D
E
----
A
R
-----
G
N
R
K
S
A
Y
Q
-----------
G
--
R
-------
Y
E
--
V
-
R
G
A
H
I
---
N
Y
W
D
--
D
T
-----
G
F
T
A
-
D
G
D
---
F
V
--
S
A
------
N
---------
E
L
H
H
G
G