@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : GMDS_HUMAN: (2020-02-01 )
MAHAPARCPSARGSGDGEMGKPRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVREFVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRTNPNA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(1N7H)
GMD2_ARATH
[Raw transfer]



GDP_A_4(1N7H)
GMD2_ARATH
[Raw transfer]



GDP_A_2(5UZH)
?
[Raw transfer]



NAP_A_3(5UZH)
?
[Raw transfer]



NDP_A_3(1N7H)
GMD2_ARATH
[Raw transfer]
4 PsiBlast_PDB 98.56100% -81 - C1 -5IN4 - GMDS_HUMAN -
36 HHSearch 98.2698% -81 - C1 -6GPK - GMDS_HUMAN -
6 PsiBlast_PDB 97.5399% -79 - C1 -6GPK - GMDS_HUMAN -
5 PsiBlast_PDB 96.43100% -78 - C1 -5IN5 - GMDS_HUMAN -
3 PsiBlast_PDB 96.12100% -81 - C1 -6GPL - GMDS_HUMAN -
2 PsiBlast_PDB 94.61100% -81 - C1 -6GPJ - GMDS_HUMAN -
1 PsiBlast_PDB 92.5299% -81 - C1 -1T2A - GMDS_HUMAN -
38 HHSearch 82.2668% -62 - C1 -5UZH 11.8 ?
40 HHSearch 77.5257% -74 - C1 -2Z1M - ? -
11 PsiBlast_PDB 75.6656% -77 - C1 -2Z1M - ? -
12 PsiBlast_PDB 73.0756% -76 - C1 -2Z95 - ? -
37 HHSearch 71.0960% -44 - C1 -1DB3 - GM4D_ECOLI -
7 PsiBlast_PDB 71.0267% -6 - C1 -5UZH 8.6 ?
13 PsiBlast_PDB 69.1848% -75 - C1 -1RPN - GM4D_PSEAE -
8 PsiBlast_PDB 69.0959% -50 - C1 -1DB3 - GM4D_ECOLI -
48 HHSearch 61.4550% -19 * C1 *1RPN - GM4D_PSEAE -
21 Fugue 61.2254% -24 - C1 -1DB3 - GM4D_ECOLI -
49 HHSearch 61.2050% -16 - C1 -1RPN - GM4D_PSEAE -
43 HHSearch 59.2659% -10 - C1 -1N7G - GMD2_ARATH -
44 HHSearch 59.1959% -12 - C1 -1N7H 12.0 GMD2_ARATH
10 PsiBlast_PDB 58.7455% -12 - C1 -1N7H 12.0 GMD2_ARATH