@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PGAM1_HUMAN: (2020-02-02 )
MAAYKLVLIRHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWTVLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPDHPFYSNISKDRRYADLTEDQLPSCESLKDTIARALPFWNEEIVPQIKEGKRVLIAAHGNSLRGIVKHLEGLSEEAIMELNLPTGIPIVYELDKNLKPIKPMQFLGDEETVRKAMEAVAAQGKAKK

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DG2_A_4(2H4Z)
PMGE_HUMAN
[Raw transfer]



DG2_B_4(2HHJ)
PMGE_HUMAN
[Raw transfer]



3PG_A_3(2H52)
PMGE_HUMAN
[Raw transfer]



3PG_A_3(2A9J)
PMGE_HUMAN
[Raw transfer]



3PG_A_3(2H4X)
PMGE_HUMAN
[Raw transfer]



3PG_A_5(2F90)
PMGE_HUMAN
[Raw transfer]



3PG_A_3(2H4X)
PMGE_HUMAN
[Raw transfer]



CIT_A_4(1YFK)
PGAM1_HUMAN
[Raw transfer]



GOL_A_3(5VVE)
?
[Raw transfer]



TLA_A_5(5UM0)
GPMA_NEIG2
[Raw transfer]



MES_A_4(4GPZ)
PGAM1_HUMAN
[Raw transfer]



GOL_A_5(1RII)
GPMA_MYCTU
[Raw transfer]



3PG_I_9(1QHF)
PMG1_YEAST
[Raw transfer]



3PG_I_9(1QHF)
PMG1_YEAST
[Raw transfer]



EDO_A_5(4EMB)
GPMA_BORBU
[Raw transfer]



EDO_B_6(4EMB)
GPMA_BORBU
[Raw transfer]



8KX_B_3(5Y2I)
PGAM1_HUMAN
[Raw transfer]



AZN_B_4(5Y2U)
PGAM1_HUMAN
[Raw transfer]
37 HHSearch 100.00100% 0 - C- -1YJX - PGAM1_HUMAN -
2 PsiBlast_PDB 100.00100% 0 - C- -1YJX - PGAM1_HUMAN -
1 PsiBlast_PDB 93.05100% -86 - C1 -1YFK 3.2 PGAM1_HUMAN
5 PsiBlast_PDB 92.75100% -91 - C1 -5Y2U 4.7 PGAM1_HUMAN
3 PsiBlast_PDB 92.53100% -88 - C1 -4GPI - PGAM1_HUMAN -
9 PsiBlast_PDB 92.1099% -87 - C1 -4GPZ 2.5 PGAM1_HUMAN
8 PsiBlast_PDB 90.68100% -93 - C1 -5Y65 - PGAM1_HUMAN -
4 PsiBlast_PDB 90.52100% -93 - C1 -5Y2I 5.0 PGAM1_HUMAN
38 HHSearch 89.99100% -87 - C1 -4GPZ - PGAM1_HUMAN -
6 PsiBlast_PDB 89.75100% -91 - C1 -5Y35 - PGAM1_HUMAN -
7 PsiBlast_PDB 89.52100% -88 - C1 -5Y64 - PGAM1_HUMAN -
10 PsiBlast_PDB 80.7860% -86 - C1 -5VVE 2.0 ?
50 HHSearch 79.2355% -80 - C1 -4EMB 3.5 GPMA_BORBU
49 HHSearch 78.7455% -80 - C1 -4EMB 3.3 GPMA_BORBU
11 PsiBlast_PDB 77.3558% -78 - C1 -4ODI - ? -
48 HHSearch 76.9857% -64 - C1 -1E58 - GPMA_ECOLI -
42 HHSearch 76.9456% -89 - C1 -1XQ9 - ? -
46 HHSearch 76.5759% -77 - C1 -4ODI - ? -
43 HHSearch 74.1859% -83 - C1 -4ODI - ? -
12 PsiBlast_PDB 73.7353% -15 - C1 -1T8P - PMGE_HUMAN -
44 HHSearch 73.7047% -79 - C1 -1RII 2.0 GPMA_MYCTU
16 PsiBlast_PDB 73.4853% -13 - C1 -2H4Z 5.4 PMGE_HUMAN
52 HHSearch 73.3456% -84 * C1 *5UM0 2.6 GPMA_NEIG2
14 PsiBlast_PDB 73.3053% -12 - C1 -2F90 5.4 PMGE_HUMAN
17 PsiBlast_PDB 73.0253% -14 - C1 -2H52 5.0 PMGE_HUMAN
15 PsiBlast_PDB 72.8653% -12 - C1 -2H4X 5.0 PMGE_HUMAN
21 Fugue 72.7350% -60 - C1 -1QHF 3.2 PMG1_YEAST
13 PsiBlast_PDB 72.7053% -15 - C1 -2A9J 5.3 PMGE_HUMAN
41 HHSearch 72.6953% -7 - C1 -2HHJ 6.1 PMGE_HUMAN
39 HHSearch 72.3053% -12 - C1 -2H4X 5.0 PMGE_HUMAN
51 HHSearch 71.0649% -56 - C1 -1QHF 3.0 PMG1_YEAST