@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PSD11_HUMAN: (2020-02-02 )
MAAAAVVEFQRAQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLKYVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEARLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSLKYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRAELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILDKKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKLT

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_3(3TXN)
PSD11_DROME
[Raw transfer]




GOL_A_3(3TXN)
PSD11_DROME
[Raw transfer]




GOL_A_3(3TXN)
PSD11_DROME
[Raw transfer]




7 PsiBlast_PDB 93.06100%-108 - C3 -5LN3 - PSD11_HUMAN -
11 PsiBlast_PDB 90.28100%-101 - C3 -6EPF - PSD11_RAT -
2 PsiBlast_PDB 89.28100%-103 - C3 -5L4K - PSD11_HUMAN -
8 PsiBlast_PDB 88.40100% -95 - C3 -6EPC - PSD11_RAT -
1 PsiBlast_PDB 88.06100% -86 - C3 -5GJQ - PSD11_HUMAN -
14 PsiBlast_PDB 86.45100%-121 - C3 -5VHH - PSD11_HUMAN -
13 PsiBlast_PDB 86.44100%-123 - C3 -5VHF - PSD11_HUMAN -
12 PsiBlast_PDB 86.34100%-118 - C3 -5VGZ - PSD11_HUMAN -
9 PsiBlast_PDB 86.25100% -83 - C3 -6EPD - PSD11_RAT -
15 PsiBlast_PDB 85.31100%-121 - C3 -5VHI - PSD11_HUMAN -
10 PsiBlast_PDB 83.42100% -76 - C3 -6EPE - PSD11_RAT -
19 PsiBlast_PDB 80.9670%-137 - C3 -3TXM - PSD11_DROME -
21 Fugue 80.8370%-135 - C3 -3TXN 3.6 PSD11_DROME
20 PsiBlast_PDB 80.8370%-135 - C3 -3TXN 3.6 PSD11_DROME
38 HHSearch 70.3769% -44 - C3 -3TXN 3.6 PSD11_DROME
16 PsiBlast_PDB 64.49100%-112 - C3 -5VHS - PSD11_HUMAN -
22 Fugue 62.6023%-108 - C3 -4D10 - CSN2_HUMAN -
40 HHSearch 61.2043% -15 - C3 -3JCK - RPN6_YEAST -
3 PsiBlast_PDB 58.95100% - - C3 -5T0G - PSD11_HUMAN -
17 PsiBlast_PDB 55.45100%-108 - C3 -5VFR - PSD11_HUMAN -