@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : ACADV_HUMAN: (2020-01-31 )
MQAARMAASLGRQLLRLGGGSSRLTALLGQPRPGPARRPYAGGAAQLALDKSDSHPSDALTRKKPAKAESKSFAVGMFKGQLTTDQVFPYPSVLNEEQTQFLKELVEPVSRFFEEVNDPAKNDALEMVEETTWQGLKELGAFGLQVPSELGGVGLCNTQYARLVEIVGMHDLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGETVAAFCLTEPSSGSDAASIRTSAVPSPCGKYYTLNGSKLWISNGGLADIFTVFAKTPVTDPATGAVKEKITAFVVERGFGGITHGPPEKKMGIKASNTAEVFFDGVRVPSENVLGEVGSGFKVAMHILNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEKIHNFGLIQEKLARMVMLQYVTESMAYMVSANMDQGATDFQIEAAISKIFGSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTNDILRLFVALQGCMDKGKELSGLGSALKNPFGNAGLLLGEAGKQLRRRAGLGSGLSLSGLVHPELSRSGELAVRALEQFATVVEAKLIKHKKGIVNEQFLLQRLADGAIDLYAMVVVLSRASRSLSEGHPTAQHEKMLCDTWCIEAAARIREGMAALQSDPWQQELYRNFKSISKALVERGGVVTSNPLGF

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_3(2D29)
?
[Raw transfer]



FDA_A_3(4N5F)
?
[Raw transfer]



FAD_B_4(2Z1Q)
?
[Raw transfer]



FAD_B_4(2Z1Q)
?
[Raw transfer]



FAD_A_3(4L1F)
?
[Raw transfer]



FAD_C_3(2DVL)
?
[Raw transfer]



FAD_I_9(1JQI)
ACADS_RAT
[Raw transfer]



FAD_A_4(1UKW)
?
[Raw transfer]



FAD_A_3(3NF4)
?
[Raw transfer]



CAA_A_5(1BUC)
ACDS_MEGEL
[Raw transfer]



MYA_A_2(3B96)
ACADV_HUMAN
[Raw transfer]



MYA_A_2(3B96)
ACADV_HUMAN
[Raw transfer]



CAA_A_5(1BUC)
ACDS_MEGEL
[Raw transfer]



TH3_A_5(2UXW)
ACADV_HUMAN
[Raw transfer]



TH3_A_5(2UXW)
ACADV_HUMAN
[Raw transfer]



TH3_A_5(2UXW)
ACADV_HUMAN
[Raw transfer]
21 Fugue 99.9599%-105 - C7 -2UXW 8.2 ACADV_HUMAN
38 HHSearch 99.8399%-105 - C7 -2UXW 8.2 ACADV_HUMAN
2 PsiBlast_PDB 99.8399%-105 - C7 -2UXW 8.2 ACADV_HUMAN
37 HHSearch 97.70100%-105 - C7 -3B96 7.1 ACADV_HUMAN
1 PsiBlast_PDB 97.70100%-105 - C7 -3B96 7.1 ACADV_HUMAN
23 Fugue 62.4437% -46 - C7 -2Z1Q 8.4 ?
41 HHSearch 55.4338% -7 - C7 -2Z1Q 8.4 ?
39 HHSearch 55.1834% 6 - C7 -3OWA - ? -
40 HHSearch 54.7134% 5 - C7 -3OWA - ? -
13 PsiBlast_PDB 50.3239% -90 - C7 -4N5F 9.2 ?
12 PsiBlast_PDB 48.3640% -80 - C7 -2D29 8.8 ?
10 PsiBlast_PDB 48.2940% -79 - C7 -1WS9 - ? -
20 PsiBlast_PDB 48.0637%-100 - C7 -4U83 - ? -
11 PsiBlast_PDB 47.9740% -80 - C7 -2CX9 - ? -
14 PsiBlast_PDB 47.5135% -75 - C7 -3PFD - ? -
27 Fugue 43.7821% 8 - C7 -4Y9J - ACD11_CAEEL -
7 PsiBlast_PDB 43.7844% -82 - C7 -1BUC 6.0 ACDS_MEGEL
16 PsiBlast_PDB 43.7337% -19 - C7 -2DVL 6.3 ?
9 PsiBlast_PDB 43.6037% -11 - C7 -1UKW 9.2 ?
43 HHSearch 43.4831% -19 - C7 -1RX0 - ACAD8_HUMAN -
8 PsiBlast_PDB 42.0137% -6 - C7 -4L1F 9.1 ?
22 Fugue 39.8138% -1 - C7 -1BUC 5.8 ACDS_MEGEL
15 PsiBlast_PDB 37.9634% -3 - C7 -3NF4 8.6 ?
17 PsiBlast_PDB 37.2035% -2 - C7 -1JQI 9.4 ACADS_RAT