Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MDQLRTPLTLRALLTERQYAGFTAAWAELRGGSLSGESLPETSPGPVLGDSLIGPDALRVRDLSWPERESTVLHLSS-PGV-SWILKTAGNTAYSVGREARA-RAWTGPLEARG-T-VARLLWYD--------DAAPLTILDYLPGCDVLGSPWEFSPRVYHQAGAALALLHRAGARQDHGFTKG-ALTRTRAR--ITEIRT-L---A-P-GGALP-------AAVDEKLAEAEDFLAS------YRPGSVVVHPTHGDWQARNWLWDEPAGQLRIIDFGRFGWRPAAADFLELH-DL---WHTHPELEEAAARGYREAGGDWPAGSEVGSGERGNGGAGDTERLLRVARAVGHMWHRTTTARRIASAPAAR 4PDY Chain:A ((43-294)) -----------------------------------------------------------------------NIEVWTDSKGRRYAAKRS-SIAP---AHCRIMVQCLRHAQEQGFTKFARFVTTSSNAPYVRHGDFTYYVTEWVSGQPANFG----LPEHVAQTAYTLAQFHEATRSFRTDWK--DDVFGLFQARWRDLRQMWLGADRKREKDAFDQLLLSMRDELHRDAAESLALFEDRDVIAYLEAERSSGGWCHLDVIPSNCLYTP-QHQVVLIDFELARPAPRALDMAHLLRRSLERGNWDGHLAYACFLHFDAVRNIPKSEYRA-------------------------------------------

General information: TITO was launched using: RESULT: Template: 4PDY.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 758 2505 3.30 12.04 target 2D structure prediction score : 0.66 Monomeric hydrophicity matching model chain A : 0.62 3D Compatibility (PKB) : 3.30 2D Compatibility (Sec. Struct. Predict.) : 0.66 1D Compatibility (Hydrophobicity) : 0.62 QMean score : 0.215

(partial model without unconserved sides chains): PDB file : Tito_4PDY.pdb: (Unconserved sides chains are recalculated) : Sequence: align-4pdy-query.scw PDB file : Tito_Scwrl_4PDY.pdb: