Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNNTYFELSDDFENIIKNTLNDKQIISIKQNPTGWTNIVYEVETNEGNFFFRFPRDEFWSRTIVKDYEFAKYIYG------KTNFDTVKLELFYDNDR-PFSVHKKISGIPLA-EVMNDLSSDEVKTISDEIAKFMYQLHCLDFKESKIFSINNIGLNLTDFLDELLNVHVDKND---------MNFWIPTAIHSDDICLVHGDLNSSNVLLDENRHVAAIIDFGFGGFGNKYNDIGRIIGRCPTSFKNEIINSYEQYSNSKLDSKLLDTNINTWTDIDNSYINYMRTIGIYK
6CAV Chain:A ((18-231))--------------LIEHYFDNFKVDSIEIIGSGYDSVAYLV-NNEYIFKTKF-------------YAKEKAIYNFLNTNLETNVKIPNIEYSYISDELSILGYKEIKGTFLTPEIYSTMSEEEQNLLKRDIASFLRQMHGLDYTDISECTIDNKQNVLEEYILLRETIYNDLTDIEKDYIESFMERLNATTVFEGKKCLCHNDFSCNHLLLDGNNRLTGIIDFGDSGIIDEYCD----------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 6CAV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 571 -30953 -54.21 -162.91
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -54.21
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.260

(partial model without unconserved sides chains):
PDB file : Tito_6CAV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-6cav-query.scw
PDB file : Tito_Scwrl_6CAV.pdb: