Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTPDRPEAEIEAMSALFARHLPGLAARSVTRLGEGMDHVAYEADGGLILRMSKEPDPARRADRIRREAALLALVAEISPLPVPRVILS-----DPDAGVLGYVKLPG-----RPLAERPVAEPGRLAPALGEFLTRLHLAPPERFSALAAPDTQPLTAWLAEAERHHRAVAAHLPAAARRRIEAFLGGAPPAEPRALAF-C--HNDLGAEHVL--AEGGTVTGVIDWSDAEIADPAYDLGLLYRD---LGPEVTASILAHYAAPWDDAAGRRAVFYARCALLEDLAYGLRTGPRRYAEAALAHLDRTFSAWG
5C4K Chain:A ((25-315))-TFDQVEKAIEQL-------YPDFTINTIQISGKGNDCIAYEINRDFIFKF---PKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKIN--EDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWYEEGLNEI--------


General information:
TITO was launched using:
RESULT:

Template: 5C4K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1183 -11831 -10.00 -43.34
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -10.00
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.474

(partial model without unconserved sides chains):
PDB file : Tito_5C4K.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5c4k-query.scw
PDB file : Tito_Scwrl_5C4K.pdb: