Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLDKKIIKIFKDKLNE-KVIKITDSSNGLAQIVKIVETKNKKYVFK-N-PKPGDGIMIYRENFVCSNLKS---KFIPKVFFK-------TKNYLIESFLEGTRPERNK----PE----IFYYSLGKNIRKIHKVKMTGFGELQKNGKGQYKTAKQYIDNLIIENFPKFKNIKSFDKKILKYLEKFIYENI--NCFDEKNSFLLHFDLIPDNILMQD--NKLAGIIDFGDANCGPVEYDFGKLYLE---ISDKMFTKVLEGYGKKL-E-M-KKIQYFVVLHLLCILPYFYKVNRK-RYEKSVKLLRKFSKF
3N4U Chain:A ((6-298))--FDQVEKAIEQLYPDFTINTIEISGEGNDCIAYEI---NRDFIFKFPKHSRGSTN-LFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVL--DFREKINE----DNKKIKKL--LSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWYEEGLNEIRSI---


General information:
TITO was launched using:
RESULT:

Template: 3N4U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1134 62652 55.25 240.05
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : 55.25
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.407

(partial model without unconserved sides chains):
PDB file : Tito_3N4U.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3n4u-query.scw
PDB file : Tito_Scwrl_3N4U.pdb: