Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKSKELEIVKKLTNVADENNIVLNEDGWTSRVYIVNKGEIV-LKFLKNKQYREEFEHEINILKLIKDH-KFNVNIPLISSSEEDNTYIVLN--GLMGKSMSAEIVDALTKEEKRKIGTQIGLFLKKLHTVAYQGKSP---NNESEIFEWFQKSFNRRKRTLKKHFNENELVAIE-DLVTTLPQRSQKLGIVQ---VFCHGDLGYNNILLT-DSLEVGVIDFGDAGYNDQSYDFVGLEDD-------DMLDAVILAYDGDEILKAK--VEIRRQLLPLMEMLFLIDKKDKEGVQQCVKRVRINLKMHEIYNG
6CGD Chain:A ((37-298))---------------------------GYDSVAYLVNNEYIFKTKFSTNK--KKGYAKEKAIYNFLNTNLETNVKIPNIEYSYISDELSILGYKEIKGTFLTPEIYSTMSEEEQNLLKRDIASFLRQMHGLDYTDISECTIDNKQNVLEEY---------ILLRETIYNDLTDIEKDYIESFMERLNATTVFEGKKCLCHNDFSCNHLLLDGNNRLTGIIDFGDSGIIDEYCDFIYLLEDSEEEIGTNFGEDILRMYGNIDIEKAKEYQDIVEEYYPIETIVYGIKNIKQEFIENGRKEI------------


General information:
TITO was launched using:
RESULT:

Template: 6CGD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1044 2689 2.58 11.16
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.75

3D Compatibility (PKB) : 2.58
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.420

(partial model without unconserved sides chains):
PDB file : Tito_6CGD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-6cgd-query.scw
PDB file : Tito_Scwrl_6CGD.pdb: