Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIDTDSLKNARFYATKTEPITDVDIVAEAPLERPELIKGKDAPGILTFARVH-REGGSDLYQLVVDKQ-G---------------RDILGEEETARAAGKQLSNGYAVG---SGVLHKLTDPALPP-VETVRAV-GEQSNTSWIYNDRVIVKYFRRLTPTPNPEIELLEELTAAGCTHSAPLRGWTSVDIEGHTYVTAMLQDLVPG-TDGYDYVTGT-----------------PDAFDATALGEAIRDVHTVLASTCETGTLAPGALATNLDRRLTGLVGRAPQLKEYEEKIRALYSTLAETSVPTQRIHGDLHLGQTLVDGDSWALIDFEGEPAASLEERRRPDSPLRDVAGMIRSFGYAAAASG----------------QDQSWADARTAELIAGYGEA-------DEAILRAYIADKCAYEVVYELENRPHMVHVPLDALASLV
5JY7 Chain:L ((4-439))-EFEDWLTQQRWYAGRNRELVSATTAMAVRLRD-----G----LELVLLQANYADGPDERYQVIVATGSGPIDEYSVVATIGIADGQTAYDALYDPDATRYLLSLIDESATVQNVRFVREPDVELPLDAPPRVFGAEQSNTSVVFGEDAIFKLFRRITPGVHPDIELNRVLARAGNPHVARLLGSFETEWEGEPYALGMVTEFAANSAEGWDMATTSTRDLFAEGDLYAEEVGGDFAGEAYRLGEAVASVHACLAHELGTE-EVPF-PADVMAQRLAAAVDAVPELREHVPQIEERYHKLADTTMTVQRVHGDLHLGQVLRTPKGWLLIDFEGEP---LDERRRPDTPVRDVAGILRSFEYAAHQRLVDQAGDDDDRARQLAARAREWVTRNCASFCDGYAAEAGTDPRDSADLLAAYELDKAVYEAAYEARHRPSWLPIPLGSIARL-


General information:
TITO was launched using:
RESULT:

Template: 5JY7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain L - contact count / total energy / energy per contact / energy per residue : 1699 16856 9.92 45.56
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain L : 0.73

3D Compatibility (PKB) : 9.92
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.407

(partial model without unconserved sides chains):
PDB file : Tito_5JY7.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5jy7-query.scw
PDB file : Tito_Scwrl_5JY7.pdb: