Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMATLRDGRWIERRPRRPAVTAQLRREASFLPWLAPALPLRVPVPRILVDQPGHEF-VSTHELVPGEPLC--AFTSAN-------GRRLGRFLRALHSRSSDDAVRHGLLPASGAAEDLANDVNLFRRTVLPLVPAGWRPDAQAVLDRVG-TFPFD---TVVHGDLGPEHVLT-CDDVITGVIDFGDARCGDAAMDFSWVLHGTP----SVFGEAAAEEYGV--TPAVRERARVWRRLSPWYDVTRGLGTGDADMVRDGLDGLVNRLRKP
5BYL Chain:A ((41-304))VAYLVNNEYIFKTKFSTN--KGYAKEKAIYNFLNTNLETNVKIPNIEYSYISDELSILGYKEIKGTFLTPEIYSTMSEEEQNLLKRDIASFLRQMHGLDYTDISECTIDNKQNVLEEYI----LLRETIYNDLTDIEKDYIESFMERLNATTVFEGKKCLCHNDFSCNHLLLDGNNRLTGIIDFGDSGIIDEYCDFIYLLEDSEEEIGTNFGEDILRMYGNIDIEKAKEYQDIVEEYYPIETIVYGIKNIKQEFIENGRKEIYKRTYK-


General information:
TITO was launched using:
RESULT:

Template: 5BYL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1046 -355 -0.34 -1.47
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : -0.34
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.440

(partial model without unconserved sides chains):
PDB file : Tito_5BYL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5byl-query.scw
PDB file : Tito_Scwrl_5BYL.pdb: