Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNNTYFELSDDFENIIKNTLNDKQIISIKQNPTGWTNIVYEVETNEGNFFFRFPRDEFWSRTIVKDYEFAKYIYGKTNFDTVKLELFYDN----DRPFSVHKKISGIPLAEVMNDL-SSDEVKTISDEIAKFMYQLHCLDFKESK-----IFSINNIGLNLTDFL--DELLNVHVDKNDMNFWI----PTAIHSDDICLVHGDLNSSNVLLDE-NRHVAAIIDFGFGGFGNKYNDIGRIIGR---CPTSFKNEIINSYEQY-SNSKLDSKLLDTNINTWTDIDNSYINYMRTIGIYK
3N4U Chain:A ((6-263))--------FDQVEKAIEQLYPDFTINTIEISGEGNDCIAYEI---NRDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEK----------------------------


General information:
TITO was launched using:
RESULT:

Template: 3N4U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 967 -28574 -29.55 -120.57
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -29.55
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.329

(partial model without unconserved sides chains):
PDB file : Tito_3N4U.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3n4u-query.scw
PDB file : Tito_Scwrl_3N4U.pdb: