Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMCGMTSLVDTALRLTYPDYRWRRLEAARPILGVRTYALTGRYRLVVKIALEEDLIDEDHGPCGEARRLAWLAGHGIPVPEVVDTGVMGDDEYLVL-RLPDDAVPADQVASEQRLAACDAVADVARAVHGIDHRGCPFDRRLRVTIPRAKEACLFAEIRSRDPMAKLTSLIAKALWVGR--------EEPVVCHGDLRPDSVLIDARTRRVAAVLDVARLGVADRYTDLAAATRGWR---AGGLDKRVWWRYGEIPADADRVRLYRLLAEFCLPRPGTGRVEPRQDGGDVRRCGFVRQLGHGVPGDPTVFHQRRGLVVLETFTRQVRGGGVDTGQEIGFGGFEHLALPAHRHRHVDGTRRPLARGQAGFLGQFAPGGLRGRLTGFDAAAGRLPQQVGVDGVTPAQHQDPVVGVQAQHAGTLTIDFGHDAQVMARRRGGALAWAPGCPCHRVRCGSC
1ND4 Chain:A ((63-263))---------------------------------------------------------------EAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLAPAEKVSI---MADAMRRLHTLDPATCPFDHQAKHRIERARTR-MEAGLVDQDDLDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVE--NGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGIAAPDSQRIAFYRLLDEF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1ND4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 816 -27285 -33.44 -144.37
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : -33.44
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.157

(partial model without unconserved sides chains):
PDB file : Tito_1ND4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1nd4-query.scw
PDB file : Tito_Scwrl_1ND4.pdb: