Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDIISRKYINEGFNSKAYIINDDYILLDGVNQNSYKNYQKYVNVINQISNVKSLEIPRIIELIEPCEEYPNGALIYKMIKGHTFRKEHIEIVN---LDNIAKKLAEFMDELYEIRVDFDKDEYI-----KNELEITEQSV-IELKEYLSESNYEKILSWFNEYKNYLL-TFNDYHFIHGDLWYENYILNDNNE---LVGIVDFEGSGMGDPAYD-IAALYYLGTGFINKVLSYYKYTDEDL-IKRVSMLIKAREIADFDDMVKNYPEEVEEQVDKIKKVL
3TDV Chain:A ((19-272))ISIQSVESLGEGFRNYAILVNGDWVFRFPKSQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNP--FVGYRKVQGQILGEDGMAVFPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAISDPDYDYVYLLEDCGELFTRQVMAYRGEVDLDTHIRKVSLFVTFDQVS------------------------


General information:
TITO was launched using:
RESULT:

Template: 3TDV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1012 -14208 -14.04 -59.45
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : -14.04
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.429

(partial model without unconserved sides chains):
PDB file : Tito_3TDV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3tdv-query.scw
PDB file : Tito_Scwrl_3TDV.pdb: