Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MREDEQMHIPAELLPDGADWLPVESGESGAAVLRDEAGGR---YVKVVPSSQVDELAAERDRIAWLASVGIPGPSVIE--------WRLTAH--GGALVTSAVEGVPADRLDAAGLRAAWPAIADILRRLHAVPVSDCPYGRGVDGMMTAARATVAEDRVQTEFLPVALQDVPPSRILADLESELPRRIVQEQAEAVVCHGDFCLPNILIAPDGSHVAGLIDVGRLGRADPYADIALLLANARETWPDESTARRADEDFAARYGIDL-DSARQDFYLRLDPLTW 1ND4 Chain:A ((21-263)) ----------------GYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHL--APAEKV---------SIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMP-----DGEDLVVTHGDACLPNIMV--ENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADR-----FLVLYGIAAPDSQRIAFYRLLDEF--

General information: TITO was launched using: RESULT: Template: 1ND4.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1046 -18154 -17.36 -79.28 target 2D structure prediction score : 0.66 Monomeric hydrophicity matching model chain A : 0.75 3D Compatibility (PKB) : -17.36 2D Compatibility (Sec. Struct. Predict.) : 0.66 1D Compatibility (Hydrophobicity) : 0.75 QMean score : 0.417

(partial model without unconserved sides chains): PDB file : Tito_1ND4.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1nd4-query.scw PDB file : Tito_Scwrl_1ND4.pdb: