Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPLRNSDRTREEILTRYFPQY-RLIAPQAPSGLGGASCIIEQGEQRLVLRQNHDPLASSSHFRRQFRALKR-LPADL-VPKPRFYR-QGWMAVEYLAGE-IGNTL---PETAVLAAMLCHLHRQPRLGW-RVTLLPLLEQYWQQASADR---RTPFWLAQLKRLRKTGEPQPLRLSPLHMDVHAGNIVHTS-LGARLIDWEYAGDGDVALELAAVWSEDDAA---RQRLITDYARVAHMNADALRRQVRRWRPWVVMLMAGWFEMRFQQSRDKQFIALADDAWRQLQTKG
4R78 Chain:A ((21-296))-----MEKIIKEKISSLLSQEEEVLSVEQLGGMTNQNYLAKTTNKQYIVKFFGKGTEKLINRQDEKYNLELLKDLGLDVKNYLFDIEAGIKVNEYIESAITLDSTSIKTKFDKIAPILQTIHTSAKELRGEFAPFEEIKKYESLIEEQIPYANYESVRNAVFSLEKRLADLGVDRKSCHIDLVPENFIESPQGRLYLIDWEYSSMNDPMWDLAALFLESEFTSQEEETFLSHYESD---QTPVSHEKIAIYKILQDTIWSLWTVYKEEQG--EDFGDYGVNRYQRA----


General information:
TITO was launched using:
RESULT:

Template: 4R78.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1222 30930 25.31 118.96
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : 25.31
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.397

(partial model without unconserved sides chains):
PDB file : Tito_4R78.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4r78-query.scw
PDB file : Tito_Scwrl_4R78.pdb: