Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MAVFTALSATQLAPWLQRYPLGQIVDLQGIVSGIDNTNYFLTT-TRG-AYVLTIFEHLSARALPFYLDFMRHLAARRMP-VPVPVAQSDGALFSLLRGKPAALVSRLEGAVQMAPAAHHCAEAGRMLARMHLAGKTFAAAAPQNPRGLAWQC---EAARAIDP------------FLR-------PAQRRLLHHELAFQHSIQA---SA--EYARLPAGICHGDLFRDNVFFVTQQGDSAGHPCRLSGFFDFYFAGLDKWLFDIAVCINDWCVMPASGQYEEARVRAFLTAYQAVRAFTPLEAVYWPALLRAAALRFWLSRLHDFYVPRPAKILNVHDPAYFERILRTFIAKRL 4PDY Chain:A ((23-303)) ----------IPQAVVSKYDLA-IQQR---HA---DGNIEVWTDSKGRRYAAKRSSI-APAHCRIMVQCLRHAQEQGFTKFARFVTTSSNAPYVRHGDFTYYVTEWVSGQPANFGLPEHVAQTAYTLAQFHEATRSFRTD-WK----DDVFGLFQARWRDLRQMWLGADRKREKDAFDQLLLSMRDELHRDAAESLA-L--FEDRDVIAYLEAERSSGGWCHLDVIPSNCLYTP----Q-----HQVVLIDFELARPAPRALDMAHLLRRSLERG---NWDGHLAYACFLHFDAVRNIPKSEYRAVEAILRFPY----------------------------------------

General information: TITO was launched using: RESULT: Template: 4PDY.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 992 -47804 -48.19 -194.32 target 2D structure prediction score : 0.60 Monomeric hydrophicity matching model chain A : 0.64 3D Compatibility (PKB) : -48.19 2D Compatibility (Sec. Struct. Predict.) : 0.60 1D Compatibility (Hydrophobicity) : 0.64 QMean score : 0.278

(partial model without unconserved sides chains): PDB file : Tito_4PDY.pdb: (Unconserved sides chains are recalculated) : Sequence: align-4pdy-query.scw PDB file : Tito_Scwrl_4PDY.pdb: