Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence -----M-KNKVEAILREMGDQSALNEVTPVSGGDI-SRAFQAKTANGVYFIKINDKAPEDF-FLKEAEGLNLLRQAGALPVPQVYYVSPPSAEDGYIIMEWVK-GESAPNTESRLGHGLALLHQHT-HTHYGLAENNYIGRLPQPNRWEKSWTRFLREHRLGFQAKLAEKRGRLPAGRKTRLEKLLDRLEQWVPDYRQPVLLHGDLWSGNWLAGPRGEPYLIDPAVFYGEREFELAFTELFGGFSPRFYAAYRDVQPLSDNYEEVRPLYQLYYLLVHLNLFGESYGPSVDRILTYYAG---- 3JR1 Chain:A ((14-309)) NLYFQGMWKSISQVLAEQFGAYYFIKHKEKLYSGEMNEIWLINDEVQTVFVKINERSYR-SMFRAEADQLALLAKTNSINVPLVYGIGNSQ-GHSFLLLEALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQIVADTLSKHNP---KPSILHGNLWIENCIQVD-DKIFVCNPACYWGDRECDIAFSSLFEPFPTNFYQRYNEIYPLEEGYLERKLIYQLYYLLNFSYRYYNKKQSYVSLTQKLINQILHK

General information: TITO was launched using: RESULT: Template: 3JR1.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1390 38840 27.94 137.73 target 2D structure prediction score : 0.63 Monomeric hydrophicity matching model chain A : 0.72 3D Compatibility (PKB) : 27.94 2D Compatibility (Sec. Struct. Predict.) : 0.63 1D Compatibility (Hydrophobicity) : 0.72 QMean score : 0.472

(partial model without unconserved sides chains): PDB file : Tito_3JR1.pdb: (Unconserved sides chains are recalculated) : Sequence: align-3jr1-query.scw PDB file : Tito_Scwrl_3JR1.pdb: