Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDSLATTFD-------------------EIRDAYALG---RSGP-----PRQVGERVW---HLPTDDGGVAVKLYASGHHARAAKEAA---------VLAHFETHGDTRFHVQALKRTATGEPLWTGANAHAMLTRWETGQFRTYDTFSPAE-------WDALGASLGALHLSLEQLHLPEVETIRARLTAINADAVRRSLLDALDR-ARSNHSAENL--------RRYVDLALRMLDR-----YYPGS--INAFPADDPQYPIHNDYNQFNYLFTGTLPPL------ILDWEASIG------APREYELVRCLNHLPLEAPHLA----------EAFVLAYRRTRR--------ID-----PARIAWAVDAACLQH----ALKLWIVQGWLDDPSRFASHLNGAVTMA-------SAMV--DARDRLVDFFSRCMEAGR------------------------------
4YB8 Chain:A ((1-464))MNDLERLFNPSAIAVVGASKDPSKIGSQILRNLLSYGFKGKVYPINPTADELMGLKCYPKVSDVPDKVDVAVISVPSDKVLGVIDDCGKAGVKFAVVITSGFKEVGNEELEEELVRRAHSYGMRVLGPNIFGYLY----APARLNATFGPKDVLSGNVAFISQSGALGIALMGYTVVENIGISSIVSVGNKADLD--DVDLLDFFDKDPNTGVIMIYLEGIAPGRGRMFIDVASRVSLRKPIIVIKAGRTEVGARAAASHTGSIAGSVAIYESAFKQSGILMAKSVEDAFDWTKALSWNPIPEGERLIVLTNGGGAGVQSTDTFADNGIYLSKPPESLIQEIKKFVPPFASFANPIDITGMAPDDWYYMGTLAALKNPDVDALTVLYCQTAVTTPIGVAKGIVDAIKEAGNSKPVTVGMVGGPEVAEAVSFLNKQRIAAYPTPERASSAMSALYAYARARSYVMKSLAVR


General information:
TITO was launched using:
RESULT:

Template: 4YB8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1799 112 0.06 0.35
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.64

3D Compatibility (PKB) : 0.06
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.208

(partial model without unconserved sides chains):
PDB file : Tito_4YB8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4yb8-query.scw
PDB file : Tito_Scwrl_4YB8.pdb: