Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGVKTKLFYEDIKPFFDI----KSLQETKNGESHTVYILDN----DYILKIYEEE-NLFNIDAEIELLNYTKK---LCVPKVIKDDIFIKGKRGLVFSKAKGESVVEF-V-----------KSTHLEQIGQFLNSFHKMTKNKKHD-NLS----AFGKSQLKVMIEKTCN--KAFKDE----FDCLK-I--ELKNDGIIHGDLFLDNATFCGDKLTCVFDFSDACEGDFIFDLAVVALSWCSNKEEINILLKAYDKEIKLDDFIIYLRYASLYYCVKRHLTNRDYDNIIFKNKFIDLI
5UXD Chain:A ((13-254))-----------LAARHGLDLDGGTLRTEEIGLDFRVAFARAHDGGDWVLRLPRRPDVLERAAVEGRLLAMLAPHLDVAVPDWRIS-----TSELIAYPLLPGSPGLTVAADGEVSWHVDMASTVYARSLGSVVAQLHAVDAEAAAATGIEVRSPAQVRGAWRQDLARVGAEFEIAPALRERWEAWLADDGCWPGHSVLTHGELYPAHTLVEDERITAVLDWTTAAVGDPAKDLMFHQVSA--PSAIFEVALQAYAEGGGR--------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5UXD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 693 -6754 -9.75 -33.11
target 2D structure prediction score : 0.55
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -9.75
2D Compatibility (Sec. Struct. Predict.) : 0.55
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.347

(partial model without unconserved sides chains):
PDB file : Tito_5UXD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5uxd-query.scw
PDB file : Tito_Scwrl_5UXD.pdb: