Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAQPLSTAADIAQQDAVRQLCEQLEFFQQHPPLEIRPLAAGQSNLNYYLRTARGEYVLRRYAR--------QL-GVCRQQEFRCQQAAAAKQIAATPLLLHNHQQLLISEFLPGG-EPLKLTDSRLSLLADTLGI-LH---NLRVQTPLLQPASYLRQLLAQGQQITLQPAANLFAALQRCAEQLAGMATDLV---LCHLDLHADNLLWNGNKIWLL-DFEYSQLCDNSFDLAAIMLHF------ELTAAQQQRLLRQYSAQRRYPDRHTAERLAATLPQRLQLAKCLYSGFCWLWYQATPALHHRAN--SWQQRLQQLLQSETTEPFR--
2PPQ Chain:A ((5-320))--TDIT-------EDELRNFLTQYDVG------SLTSYKGIAENSNFLLHTTKDPLILTLYEKKNDLPFFLGLMQHLAAKGLSCPLPLPRKD-GELLGELSGRPAALISF--LEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACNDLLAYDVSICLNAWCFEKDGAYNVTKGKALLEGYQSVRPLS---EAELEALPLLSRGSALRFFLTRLYDWLTTPAGALVVKKDPLEYLRKLRFHRTIANVAEYGLA


General information:
TITO was launched using:
RESULT:

Template: 2PPQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1304 -35165 -26.97 -124.70
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : -26.97
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.371

(partial model without unconserved sides chains):
PDB file : Tito_2PPQ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2ppq-query.scw
PDB file : Tito_Scwrl_2PPQ.pdb: