Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPLRNSDRTREEILTRYFPQYR-----LIAPQAP-SGLGGASCIIEQGE----QRLVLRQNHDPLASSSHFRRQFRALKR-LPADLVPKPRFYRQGWMAVEYLAGEIGNTLP-----ETAVLAAMLCHLHRQPRLGWR----VT----LLPLLEQYWQQASAD-----RR----TPFWLAQLKRLRK----------------TGEPQPLRLSPLHMDVHAGNIVHTSLGARLIDWEYAGDGDVALELAAVWSEDD--------------------AA-RQRLITDYARVAHMN--------ADALRRQVRRWRPWVVMLMAGWFEMRFQQS-RDKQFIALADDAWRQLQTKG
3MES Chain:B ((50-400))-----DTEIIIGICRKNIPGWKEINESYIEVKQIFSGLTNQLFVVSIVNELKHPRILFRIYGKHV--FYDSKVELDVFRYLSNINIAPNIIADFPEGRIEEFIDGEPLTTKQLQLTHICVEVAKNMGSLHIINSKRADFPSRFDKEPILFKRIYLWREEAKIQVSKNNQIDKELYSKILEEIDQLEELIMGGEKFSMERALELKLYSPAFSLVFAHNDLQENNLLQTQNNIRMIDYEYSAINFAGADIANYFCEYIYDYCSEKQPYFKFKYEDYPCEELRKLFISVYLSQTLQEQVMPSQQIVHIMTKAVEVFTLISHITWGLWSIA-----SVEFDFTEYANTRFT------


General information:
TITO was launched using:
RESULT:

Template: 3MES.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 956 -37877 -39.62 -147.96
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain B : 0.63

3D Compatibility (PKB) : -39.62
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.417

(partial model without unconserved sides chains):
PDB file : Tito_3MES.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3mes-query.scw
PDB file : Tito_Scwrl_3MES.pdb: