Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----------------EQDCYYTV-----WTSNGNSWLRSIRDKTRSDHTLGIHGASVYFDEDCYPHYHSKE
2BBY Chain:? ((175-243))RARADKQHVLDMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIH-KNTWELKPEYRHYQ---


General information:
TITO was launched using:
RESULT:

Template: 2BBY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 106 939 8.86 19.98
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.68

3D Compatibility (PKB) : 8.86
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.104

(partial model without unconserved sides chains):
PDB file : Tito_2BBY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2bby-query.scw
PDB file : Tito_Scwrl_2BBY.pdb: