Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MSVEVNSEETVPEVLLLDLGGITFPSPIGPLLAAAESIRDPGLPRRMVSSVLWKELECGFLTIPEFCEQFAKGKAVVQEALIGWFEGLRAMEPSPRMIILLSELRLKYPGLKIGAVTNNFKHPAPLRPMRDLRGELL-FDTIVESAVEGMAKGHPGGERWALVEVWNFHDGSYMEAHIIWSSVR------------------LFKTALERLDYHGPASAVLYLDDLKHN-LAQPASLGIRTRHAITP---EEATETIRKMLALDVSSGSPLQKYLASLGVLPDSISDQARPFAWQFSFGQSNPTYLVGLIPEK-PLEGYTLQKLLEEKCAVLRKQP----------------PGELLPSAHDVVREY-------TVMSELGKEGCVPVPRTLG-----LCTDKTICGAAFYVMRFVTGVVFTDPNLPNLQPYQRR--------KVYEDLMKTAAAVHNF-PWHRSEALTQRFRGDPSKYVSKQVERWSTQGIDVEGFKRLA------------KGLLDNVKISQKSPEFQSLVHGDFRLDNCIYDPHTFEVV--------AVLDWELSTTGNSLVDIA--SALSQYYGLY-PGIAQLSSNFEELGIPKERELLDLYLRYREVESIPEGLMQYMEAFQCLRMAG---------ILYGVLMRTKKGNASQQH--------QQAKGGSIFSMAYVTKL-----CTRGLELLQSRACSSSPIAVDAPSKL----------
4KVM Chain:A ((5-731))QLSPKEITLFRTALKCYETKQYKKGLK-AIEPLLER----HPEHGESLAIKGILLHSLG-----------NTKEGYDNVRLGLRNDVGSGVCWHIF-GLISRADKDYVQAAKCYINAHKLEKNNSSLLRDLALLQSQLRQYKALADTRNALLQDNPGVRANWSALAVAQFLRGEYASAYKIVDAFESTINQGVPVDTQEESEAMLFMNLVILKK-DGVEDAYKHLLSIEKKVLDRVAFLETRAEYELYLSKMEEAKSTIYLLLDRNPDNHQYYYNLQRAYGYEDAS-GKVLDSAEWLNLYSQLAKRYPKSECPTRLPLEKLEGDEFLTHVDLYLRKKLKRGIPSVFVDVKSLYKDTKKCKVVEDLVSKYASSLSTTNKFSEDDDNSQIEIPTTLLWTYYFLAQHFDHVGELEKAEKYVDLAIDHTPTLVELFMTKARISKHKGELQTAMEIMDHARKLDLQDRFINGKCAKYMLRNDENELAAKTVSLFTRNEAVGGAVGDLADMQCLWYMLEDGKSFARQKKFALALKRFSTVFKIFDTWADDQFDFHFFAFRKGSLRTYLDLMSWEDSVYDDPSFREAAQGSIEIYFALFDLPFAKYSPKLPDFEKLSSGEI-NEEEEKKIYKKLKKDLSKRLERAEKLKEADKSRKYDEDPLGENLVATSEPLKEAQKCLEKLLPYGDKNPSAYILAAQLYTRLKNFDTASKYLEQAKVILGQNDPTVISTEKFYNSIKTQSNAA


General information:
TITO was launched using:
RESULT:

Template: 4KVM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2534 80871 31.91 134.79
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : 31.91
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.187

(partial model without unconserved sides chains):
PDB file : Tito_4KVM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4kvm-query.scw
PDB file : Tito_Scwrl_4KVM.pdb: