Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------AAAGPTSPKSGEQKQQVPVCLVQLLEG---D-LFWKFYTARPGELYAFAIENLSGIFIT-AKDCTIK--DVYGKKIRRRFTLKS
4JM1 Chain:A ((1-84))GADKYIDTITGFSCEKAAVTDNGFLVIAIDADSDSGYDMLASQFLEEAKKE----GVSGLKGVLIVDIKNAKFEQGAVVGKRIGKAYK---


General information:
TITO was launched using:
RESULT:

Template: 4JM1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 244 12302 50.42 175.74
target 2D structure prediction score : 0.39
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : 50.42
2D Compatibility (Sec. Struct. Predict.) : 0.39
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.319

(partial model without unconserved sides chains):
PDB file : Tito_4JM1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4jm1-query.scw
PDB file : Tito_Scwrl_4JM1.pdb: