Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSHIQRETSCSRPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGK--TAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSD----RVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPF-SPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGEFSPSLQKRLFQKY---GIDNPDMNKLQFHLMLDEFF-------------------------------
3HAM Chain:A ((1-299))MVNLDAEIYEHLNKQIKINELRYLSSGDDSDTFLCNEQYVVKVPKRD------------SVRISQKREFELYRFLEN-CKLSYQIPAVVYQSDRFNIMKYIKGERITYEQYHKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLTDEMLEHIETIYENILNNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVGDPDNDFLCLLDCSTDDFGKEFGRKVLKYYQHKAPEVAERKAELNDVYWSIDQIIYGYERKDREMLIKGVSELLQTQAEMFIF


General information:
TITO was launched using:
RESULT:

Template: 3HAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1083 -18938 -17.49 -73.40
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -17.49
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.300

(partial model without unconserved sides chains):
PDB file : Tito_3HAM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3ham-query.scw
PDB file : Tito_Scwrl_3HAM.pdb: