Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MSLSSVAASFELGRDIEPSVVAMLQQAANNKSHGVYQSLSAEQLLPKLEAFIRAQGLAGAEVKGLRRMGGGASKEQFVFDLHSAAGPVQRCVLRMDPLESAVVTDRRKEYEVLNCMQS-VLPVPPVLWADIEGA---ELGRPALICGFIGGVTKPSGDSGNVSGLGALLPERFRERLSAQFIDYLVAMHGVAVDFKPEVFQVPDADPQQAARWQLNWWSSVWQDDAIEGSPLMGLAERWMRDNLPSARELVVVHADYRTGNYLFDEDSQEISTVLDWELAHIGDYHEDLAWIICHKGVTEDGQIMASGLMTPEELCERYRAATGRLVDAKTLHFYKVLSVYKCVAICLATAAQTASRKHSHQDVLLSWLTAAGHSFSAELLSLLKEVQ 2PPQ Chain:A ((10-286)) ---------------------------------------------DELRNFLTQ-YDVG-SLTSYKGIAE---NSNFLLHTT-----KDPLILTLYEK----KNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGELSGRPAALISFLEGMWLRKPE----------------AKHCREVGKALAAMHLASEGFEIKRPNALS---VDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGD--ELSGLIDFYFACNDLLAYDVSICLNAWCFEKD---GAYNVTKGKALLEGYQSVR--PLSEAELEALPLLSRGSALRFFLTRLYDWLT--------------------------------

General information: TITO was launched using: RESULT: Template: 2PPQ.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1250 -77482 -61.99 -290.19 target 2D structure prediction score : 0.61 Monomeric hydrophicity matching model chain A : 0.63 3D Compatibility (PKB) : -61.99 2D Compatibility (Sec. Struct. Predict.) : 0.61 1D Compatibility (Hydrophobicity) : 0.63 QMean score : 0.250

(partial model without unconserved sides chains): PDB file : Tito_2PPQ.pdb: (Unconserved sides chains are recalculated) : Sequence: align-2ppq-query.scw PDB file : Tito_Scwrl_2PPQ.pdb: