Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence --------MN-DQAFTFQTLHPDTIMDALFEQ------GIRVDS-GLTPL-NSYENRVYQFQDEDR--------QRFVVKFYRPQRWSAEQIQEEHQFAHDLLDDDVPVAAPLKFNNQTLLTHEGFYYAVFPSLGGRQFEAD---NIDQMEWVARYLGRIHQTGRKEDFIARPTIG-IQEYLLEPRQVFETSALIPKALKDNF----LNATDKLIDAVKTCWRD-EISVLRLHGDCHAGNILWRDGPLFVDLDDARMGPAVQDLWMLLNG---------------------DKAEQRMQLETIIEAYEEFS--PFNSDEIVLIEPLRAMRFVYYLAWLIRRWDDPAFPRNFPWLTGEDYWRSQISTFTEQVKVLKEPPLQLTPMY 1NW1 Chain:A ((32-426)) GMKELLSTMDLDTDANTIPELKERAHMLCARFLGGAWKTVPLEHLRISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVY-FNPETESHLVAESVIFTLLSERHL-GPKLYGIFSGGRLE---------EYIPSRPLSCHEISLAHMSTKIAKRVAKVHQLEVPIWKEPDYLCEALQRWLKQLTGTVDAEHRFDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCHNDLQEGNILLPKRLVLIDFEYASYNYRAFDFANHFIEWTIDYDIDEAPFYKIQTENFPENDQMLEFFLNYLREQGNTRENELYKKSEDLVQETLPFVPVSHFFWGVWGLLQVELSP-----VGFGFADYGRDRLSLYFKHKQL--LKNLA--

General information: TITO was launched using: RESULT: Template: 1NW1.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1303 47029 36.09 152.69 target 2D structure prediction score : 0.70 Monomeric hydrophicity matching model chain A : 0.60 3D Compatibility (PKB) : 36.09 2D Compatibility (Sec. Struct. Predict.) : 0.70 1D Compatibility (Hydrophobicity) : 0.60 QMean score : 0.385

(partial model without unconserved sides chains): PDB file : Tito_1NW1.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1nw1-query.scw PDB file : Tito_Scwrl_1NW1.pdb: