Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceLKRVVICEVFIRMSGGLDLPIGKDFVPAGETTKIHAYTCETDTMCGAECDTPSNYRYSS
3N40 Chain:F ((339-388))---VTIREAEIEVEGNSQLQI--SFSTALASAEFRVQVCSTQVHCAAECHPPKDH----


General information:
TITO was launched using:
RESULT:

Template: 3N40.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain F - contact count / total energy / energy per contact / energy per residue : 104 -28170 -270.86 -563.39
target 2D structure prediction score : 0.32
Monomeric hydrophicity matching model chain F : 0.74

3D Compatibility (PKB) : -270.86
2D Compatibility (Sec. Struct. Predict.) : 0.32
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.253

(partial model without unconserved sides chains):
PDB file : Tito_3N40.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3n40-query.scw
PDB file : Tito_Scwrl_3N40.pdb: