Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence --MKDTILDALKAAYKLDADNLIANRFGSGHIHKTYKVESSTQSFILQEFNDTVFKYPERISNNLGYLL-DNFDPANIPFVLPLPIPNIDGGLFTELDGGLYRLFPFVNG-VTRDDIDYKEQASKAAEAFAH-FVLVFLPTDSNKLQDTIQDFHHLGWRYSQFDAALKAPAIEIDEETREMIAYYETRKDLLEQYGIYRNKLPLRATHNDTKINNLIFSEDLKKVNAVIDLDTIMAGFVFYDFGDLARTVACTRDESSLDWGKIKIDMVKYEGLLEGFYTVLAGHVTEEELNSLSFGAEMMTLIMGLRFLTDHLQGNTYYQVDYVEQNLHRSKNQAELLTAFMEKREEIKTLETNLKRKFL 2PPQ Chain:A ((5-320)) TDITEDELRNFLTQYDVGS----LTSYKGIAENSNFLLHTTKDPLILTLYEKKN-------DLPFFLGLMQHLAAKGLS--CPLPLPRKDGELLGELSGRPAALISFLEGMWLRKP--EAKHCREVGKALAAMHLAS---EGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAH---------WPKDLPAGVIHADLFQDNVFFLGD--ELSGLIDFYFACNDLLAYDVSICLNAWCFEKDGA--------YNVTKGKALLEGYQSVRP--LSEAELEALPLLSRGSALRFFLTRLYDWLTTP---------AGALVVKKDPLEYLRKLRFHRTIANVAEYGLA---

General information: TITO was launched using: RESULT: Template: 2PPQ.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1473 19143 13.00 62.76 target 2D structure prediction score : 0.57 Monomeric hydrophicity matching model chain A : 0.67 3D Compatibility (PKB) : 13.00 2D Compatibility (Sec. Struct. Predict.) : 0.57 1D Compatibility (Hydrophobicity) : 0.67 QMean score : 0.379

(partial model without unconserved sides chains): PDB file : Tito_2PPQ.pdb: (Unconserved sides chains are recalculated) : Sequence: align-2ppq-query.scw PDB file : Tito_Scwrl_2PPQ.pdb: