Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKSKELEIVKK-LTNVADENNIVLNEDGWTSRVYIVNKGEIVLKFLKNKQYREEFEHEINILKLIKDHKFNVNIPLISSS-EE----DNTYIVLNGLMGKSMSAEIVDALTKEEKRKIGTQIGLFLKKLHTVAYQGKSPNNESEIFEWFQKSFNRRKRTLKKHFNENELVAIEDLVTTLPQRSQKLGIVQVFCHGDLGYNNILLTD--SLEVGVIDFGDAGYNDQSYDFVGL------EDDDMLDAVILAYDG--DEILKAKVEIRRQLLPLMEMLFLIDKKDKEGVQQCVKRVRINLKMHEIYNG
3N4U Chain:A ((6-299))--FDQVEKAIEQLYPDFT-INTIEISGEGNDCIAYEIN-RDFIFKFPKHSRGSTNLFNEVNILKRIHNK-LPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWSFEKIIYGKEYGYMDWYEEGLNEIRSIK--------


General information:
TITO was launched using:
RESULT:

Template: 3N4U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1206 60106 49.84 216.21
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : 49.84
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.532

(partial model without unconserved sides chains):
PDB file : Tito_3N4U.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3n4u-query.scw
PDB file : Tito_Scwrl_3N4U.pdb: