Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMMKTEPSINLSLKRLVENPSYADACDILDERPLEFWLPTIEVILSQHQLAKKTVLRISNG-SNALFDIDNEYILKLVPPNW-DYQGISEVTSLTLLNLANHSEN-LSLAVPKMIGFGRVDNWFYVIMTKLKGLSMATV-WPDLNTAQKLPLVKQLGQFMTELHQITSTQAFTPD---PRLSVDWPEYIKGLISDSVPRHARK-GVSPELVTQISDYLQAADSD--FNDIHAVFIHMDLHPWNLMVEKHHGHYRLCGVVDFGDALVGNCQLLELATPIIFVC-QGNKTLIDELVANYSPLNEVYLDRQVLQRQLMAVSLIRPACDFNFVLQQVPQSGKRDSWQAIAKQLFPLYKGRPA
3HAM Chain:A ((17-291))-------------------------------------------------KINELRYLSSGDDSDTFLCNEQYVVKVPKRDSVRISQKREFELYRFLE-----NCKLSYQIPAVVYQS----DRFNIMKYIKGERITYEQYHKLSEKEKDALAYDEATFLKELHSIEIDC--SVSLFSDALVNKKDKFLQD-KKLLISILEKEQLLTDEMLEHIETIYENILNNAVLFKYTPCLVHNDFSANNMIFRNNR----LFGVIDFGDFNVG-DPDNDFLCLLDCSTDDFGKEFGRKVLKYYQHK---APE--VAERKAELNDVYWSIDQIIYGYERKDREMLIKGVSELLQ-----------


General information:
TITO was launched using:
RESULT:

Template: 3HAM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1109 10665 9.62 40.40
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : 9.62
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.275

(partial model without unconserved sides chains):
PDB file : Tito_3HAM.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3ham-query.scw
PDB file : Tito_Scwrl_3HAM.pdb: