Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---MNEQWLEHLPLK-DIKEISPVSGGDVNEAYRVETDTDTFFLLVQRGR----KESFYAAEIAGLNEFERAGITAPRVIAS------GEVNGDAYLVMTYLEEGAS----GSQRQLGQLVAQLHSQQQEEGKFGFSLPYEGGDISFDNHWQDDWCTIFVDKRLDHLKDE-LLNRGLWDANDIKVYDKVRRQ---IVAELEKHQSKPSLLHGDLWGGNYMFLQD--GRPALFDP-APLYGDREFDIGITTVFGG--------------FTSEFYDAYNKHYPLA------KGASYRLEFYRLYLLMVHLLKFGEMYRD---------------------SVAHSMDKILQDTTS---------
4OCV Chain:A ((24-378))TNEALFDVASHFALEGTVDSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFPDTVNLMRNVELVTSTLKAQGKETLDIVRTTSGDTWAEIDGGAWRVYKFIEHTMSYNLVPNPDVFREAGRAFGDFQNFLSGFDANQLTET-----IAHFHD---TPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRDGSIPLRVTHNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNLLTMECGMRFLADYLEGDVYFATKYPEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT


General information:
TITO was launched using:
RESULT:

Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1217 47001 38.62 167.86
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : 38.62
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.469

(partial model without unconserved sides chains):
PDB file : Tito_4OCV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4ocv-query.scw
PDB file : Tito_Scwrl_4OCV.pdb: