Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)


Input alignment information:
Query sequenceMSALELPAKILEWIEKAAGSPVLKADRIPGGGTRQGWLVDVAAAAAGDGSGKLFLRYSPERLPDRGAFHRLATEAEVLRALRGAGVAVPAVCAVHPVEE--AVLLERVPGETWFYRIRDPDEQVRVAQDFIRSLAKVHRLDPADLGVPGLGPVRSAREHALERIAEIRRRGTAPDGSIDPL-----VRLSADWLESHVPDYDGPVVLVQGDTGPGNFLYQDGRVTAVLDWELCHFGDPMDDIAWLSLRTVQDTFTHLPDRLAEYEKLSGHAIDVDRVRYYRVFAETTMATLTPNEGARAPAAEDGSGGADKDVGNHLLYAQLHRRLWLEALNAVMGLGLKKPVMPEPVDSSDWQPLYGDVLAMLRTITPRMGDALAVQWSKGIARLVRYLRELDACGRAGNELERSDIASLLGFTPLSLPAGRDALARANAAGRVSDVDFTRYLWNRVMRDDHLMRHASGALHSRTWPPLTNPS
1ND4 Chain:A ((10-264))----GSPAAWVERLFG------YDWAQQTIGCSDA-----AVFRLSAQGRPVLFVKTDL-----SGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLLSSHLA---PAEKVSIMADAMRRLHTLDPATCPFDHQ------AKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARLKARMPD-GEDLVVTHGDACLPNIMVENGRFSGFIDCGRLGVADRYQDIALATRDIAEELGGEWADRFLVLYGIA--APDSQRIAFYRLLDEFF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1ND4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output 		Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1180 -17854 -15.13 -71.99
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -15.13
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.281

(partial model without unconserved sides chains):
PDB file : Tito_1ND4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1nd4-query.scw
PDB file : Tito_Scwrl_1ND4.pdb: