Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQRQTELKNWLQTVYPE----------RDFDLSFAAADADFRRYFRAAFSDGGSVVCMDAPPD-----------KMSVAPYLKVQKLFDM---VNVPQVLHADTDLGFVVLNDLGN-TT-FLTAMLQEQGEAAHKALLLEAIGELVGLQKASREGVL---------PEYD-RETML--REINLFPEWFVA----KELGRELTF---KQ--RQLWQQTADTLLPPLLAQPKVYVHRDFIVRNLMLTRGRPGVLDFQDALYGPISYDLVSLLRDAFIEWEEEFVLDLVIRYWEKARAAGLPVPAEFDEFYRRFEWMGVQRHLKVAGIFARLYYRDGKDKYRPEIPRFLNYLRRVSRRYAELAPLYALLVELVGDEELETGFTF
2PYW Chain:A ((12-275))----KSLVDYIKSTPALSSKIGADKSDDDLVIKEVGDGNLNF-VFIVVGS-SGSLVIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFDRTMALIGMRYLEPPHIILRKGLIAGI---EYPFLADHMSDYMAKTLFFTSLLYHDTTEHRRAVTEFCGNVELCRLTEQVVFSDPYRVSTFNRWTSPYLDDDAKAVREDSALKLEIAELKSMFCERAQALIHGDLHTGSVMVTQDSTQVIDPEFSFYGPMGFDIGAYLGNL------------------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2PYW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 691 -21155 -30.62 -97.49
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain A : 0.59

3D Compatibility (PKB) : -30.62
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.265

(partial model without unconserved sides chains):
PDB file : Tito_2PYW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2pyw-query.scw
PDB file : Tito_Scwrl_2PYW.pdb: