Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence -MQQQSFYENTVPIAISQLRNDRQIPTLCQYFD-------GGQCRVFKVTFTD-GESWAVRVPLFVRHASQNTVIQLLESEARILRELEVKEFSWAARLRGCSFTFDNAIRYPFIALTWIPGSQLLWSDDFPTRPLRDKILDQVATMHISLIECSKEARGSSLKHFTRIIQNKTRRVREGLLPEITEQDCSDQMNILPNVL--LPELDEAPFAITHGDISPQNILIDAH-HNVTGIIDWGFSSRV-----------------------------------------------PFQ---QAACFPRFLQLQ---NIDLWPNST----------LQKDRETYIT-------------SVRCRAPL--EVSSMMIQVLSSENADFQHC--FLESIISKGMHRRLARNGWGVSSCGQGSEGEANDRNL 1KOB Chain:A ((23-374)) INDYDKFYEDIWKKYVPQPVEVKQGSVY-DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFIN----TPYPLDKYTVKNEISIMN----------------------QLHHPKLI-------NLHDA--FEDK---YEM-------VL-ILEF---LSGGE--LFDRIAAEDYK---------MSEAEVINYMRQACEGLKHMHEHS-----IVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANFSSLRKHRPQEYQIYD-SYFDRKEA-----

General information: TITO was launched using: RESULT: Template: 1KOB.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1146 36407 31.77 140.03 target 2D structure prediction score : 0.57 Monomeric hydrophicity matching model chain A : 0.62 3D Compatibility (PKB) : 31.77 2D Compatibility (Sec. Struct. Predict.) : 0.57 1D Compatibility (Hydrophobicity) : 0.62 QMean score : 0.205

(partial model without unconserved sides chains): PDB file : Tito_1KOB.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1kob-query.scw PDB file : Tito_Scwrl_1KOB.pdb: