Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSLTSSQLNSLRSLPCFEKVVD-ISLLIDGMSHTCIKVTTALQVFFVKKLNSET--------AETEVLSSKYAAKHGLSPRIIYHDN----------AWLVTDYIVGITLDKNELSSSQCIDTGLTLMAKLHQLVPQPNAKTIP--------CLDTSESVRRLFT-----NPNSIPSQQKLFLADITETLTLKIGIEQKRSDVTNIICHGDINYSNIIIDET--RQSWLIDFECSHLAPVDFDLSMFIAI---------NNISPLHI-DEIVNRYMSLVPSYKPNKI------LLTYYLLYSYFINGLWYLDNT--NDAKINNHLRSLAIEQWSAFDSFVVKYHLDIPKLMPLIS------
4OCV Chain:A ((24-378))---TNEALFDVASHFALEGTVDSIEPYGDGHINTTYLVTTDGPRYILQRMNTGIFPDTVNLMRNVELVTSTLKAQGKETLDIVRTTSGDTWAEIDGGAWRVYKFIEH-TMSYNLVPNPDVFREAGRAFGDFQNFLSGFDANQLTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRD--GSIPLRVTHNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNLLTMECGMRFLADYLEGDVYFATKYPEHNLVRSRTQIKLVREMEQRADETRAIVADVMETT


General information:
TITO was launched using:
RESULT:

Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1369 -25708 -18.78 -86.56
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -18.78
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.313

(partial model without unconserved sides chains):
PDB file : Tito_4OCV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4ocv-query.scw
PDB file : Tito_Scwrl_4OCV.pdb: